G1260226 (LOC106590529)



Basic Information


Item Value
gene id G1260226
gene name LOC106590529
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13462865 ~ 13505161 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1439856
cttctctctctgcacttGTACTGTACAACACTCTTCTCTCAACTCTTTGCCTGctctctttttgttgttgtagcctaTCTCATTTGTTTTATCagttctctcagtctctctttctctctcaccttctccagGTTGAAGTCTTTCTGAGGCATGACGTTGACACAGGCGACCAGCGTAGCGCACAGCAGAACTCCCATTATGCTCAGCCTCATGGTTACAGATCTGTGTGTGTGATAGCTCGACTCTCCggggtgtgtgtgaggaggaAAATGACTGCACCACCG
>TU1439858
gaaatatgctttttttgatcatattttattattttgttcatATTGAATGGAATTGGCTGAAAATAACTCAAATTTGTGGAATAAATCCCTCAATATATGCAGTCTTCAGTCTTCTTCCAGGAAAATAGTTTGGATGTGAAATGGAGACAGATGCCAGTAGAAGAGTAGTAGAGGGAGAATGGGATGAGTGAACATTTATGCCTCGGCACATTCACCGTTCCTGGGCAGGAAAACAATGTTCCCAGAGAGGATTCCTGTATCCAGAGAGAACTGCATGAACTTCTTCTGGACATCTGCGCTCACCTCTGGAGTGCGAcTGAAGAGTTTGTTGAGAACGTCAGTTACTCCGTGTTTGGTCTTGATGGTGTGGATCAGAGCAAAGTCATCATACTGGACAGCTACCACACGCATGTCATTTTCATTGTtccaacGCTGGCTGATGAAGGTGAAGCGGCCTGGGATGTCAGTCTTCTTGGCCAGTTCGGTCATCCTCCAGCAAGAGCCATCAGAGttgCGCATAGCGCTGCTGATGTCCAGGTTACCTCCGGCAGTGGGCAGCATCATGGAAGTTCCCATCTTCATACCAGCCTTACGGTTCATAAACCACTTGGCGTTGGTGGCAAAGCCCACAACCCACCACTTACCAGCCATcttctccagGTTGAAGTCTTTCTGAGGCATGACGTTGACACAGGCGACCAGCGTAGCGCACAGCAGAACTCCCATTATGCTCAGCCTCATGGTTACAGATCTGTGTGTGTGATAGCTCGACTCTCCggggtgtgtgtgaggaggaAAATGACTGCACCACCG

Function


NR:

description
prostaglandine D synthase

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1439856 False 284 lncRNA 0.48 2 13462865 13496741
TU1439858 True 813 TUCP 0.48 7 13462865 13505161

Neighbor


gene id symbol gene type direction distance location
LOC110515851 LOC106578380 coding downstream 10819 13402093 ~ 13452046 (-)
LOC118938788 NA coding downstream 61945 13399453 ~ 13400920 (-)
LOC110489604 mllt10 coding downstream 93361 13288725 ~ 13369504 (-)
commd3 comd3 coding downstream 229944 13228122 ~ 13232921 (-)
LOC110489603 bmi1a coding downstream 235452 13219351 ~ 13227413 (-)
zgc:194621 LOC106590539 coding upstream 21754 13518495 ~ 13528448 (-)
LOC110490917 LOC106590522 coding upstream 60402 13557143 ~ 13566414 (-)
rpl22l1 LOC105022019 coding upstream 76408 13573149 ~ 13576243 (-)
eif5a LOC106590523 coding upstream 86443 13583184 ~ 13591943 (-)
tnikb LOC106578374 coding upstream 96329 13593070 ~ 13657184 (-)
G1260211 NA non-coding downstream 28646 13433460 ~ 13434219 (-)
G1260209 NA non-coding downstream 39421 13423064 ~ 13423444 (-)
G1260192 NA non-coding downstream 47976 13371195 ~ 13414889 (-)
G1260207 NA non-coding downstream 56660 13405610 ~ 13406205 (-)
G1260142 NA non-coding downstream 57840 13399457 ~ 13405025 (-)
G1260254 NA non-coding upstream 28710 13525451 ~ 13525838 (-)
G1260257 NA non-coding upstream 34637 13531378 ~ 13531615 (-)
G1260258 NA non-coding upstream 36207 13532948 ~ 13533259 (-)
G1260269 NA non-coding upstream 54431 13551172 ~ 13551776 (-)
G1260199 NA other downstream 75278 13386389 ~ 13387587 (-)
LOC110489593 LOC106590549 other downstream 929477 12507315 ~ 12533443 (-)
G1257642 NA other downstream 2643954 10818443 ~ 10818911 (-)
LOC110489570 LOC106590600 other downstream 3166875 10256343 ~ 10296042 (-)
G1260265 NA other upstream 40329 13537070 ~ 13538208 (-)
msl2b LOC106590518 other upstream 211272 13708013 ~ 13716136 (-)
LOC110489642 LOC106590491 other upstream 836415 14324774 ~ 14335805 (-)
LOC110489646 LOC105021982 other upstream 916087 14412828 ~ 14435607 (-)
G1261237 LOC106596271 other upstream 963066 14459807 ~ 14478227 (-)

Expression



Co-expression Network