G1259854


Basic Information

Item Value
gene id G1259854
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13523016 ~ 13524334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1439365
GGGTTTTATTCACGTGTTACTTTATATACATAGAAAGCATGAACGACGAGGGTAAAGAGAAGGAGTACAATGTTCTGCCGCCATTTTGTTTATATGAACAACAGCCATTTGTACAGTTCATTGTgatactcactaaacagagggATGGAAGTAAAGCATTTGTAGCCCACTTAACAATAGTTTATTTTTTACTAAATGAAACTAACATGAAATCTATTTGgtacaaaatataaaataatacagTGTGACACTGAAACATTGTAGACTTTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCTGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACATACAGGCAACAAGCATCATTCACATGATGATGCTGATGCGTCTGTATTTTAATGATAACTTcagcttcctgtctctctgtggctCAGTCTTCATCCCAACACCACGGGCGACGTCTCACACATATATTTCTTCGTCTG
>TU1439366
GGGTTTTATTCACGTGTTACTTTATATACATAGAAAGCATGAACGACGAGGGTAAAGAGAAGGAGTACAATGTTCTGCCGCCATTTTGTTTATATGAACAACAGCCATTTGTACAGTTCATTGTgatactcactaaacagagggATGGAAGTAAAGCATTTGTAGCCCACTTAACAATAGTTTATTTTTTACTAAATGAAACTAACATGAAATCTATTTGgtacaaaatataaaataatacagTGTGACACTGAAACATTGTAGACTTTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCTGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACAATGTGTGACCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCTGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCTGGACTTAGAAAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCTGGACTTAGACAATGTGTGACCCCAGTGCCGGACTTAGACATACAGGCAACAAGCATCATTCACATGATGATGCTGATGCGTCTGTATTTTAATGATAACTTcagcttcctgtctctctgtggctCAGTCTTCATCCCAACACCACGGGCGACGTCTCACACATATATTTCTTCGTCgtctCTGCTTCCTCCTGGTCTGCATTTCCTGCTGCTGCTTTAGCCGCACCTCCTCCAGACTCAGGCtcccacctgcacacacacacacacacaca
>TU1439367
GGGTTTTATTCACGTGTTACTTTATATACATAGAAAGCATGAACGACGAGGGTAAAGAGAAGGAGTACAATGTTCTGCCGCCATTTTGTTTATATGAACAACAGCCATTTGTACAGTTCATTGTgatactcactaaacagagggATGGAAGTAAAGCATTTGTAGCCCACTTAACAATAGTTTATTTTTTACTAAATGAAACTAACATGAAATCTATTTGgtacaaaatataaaataatacagTGTGACACTGAAACATTGTAGACTTTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCTGGACTTAGAAAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCTGGACTTAGACAATGTGTGACCCCAGTGCCGGACTTAGACATACAGGCAACAAGCATCATTCACATGATGATGCTGATGCGTCTGTATTTTAATGATAACTTcagcttcctgtctctctgtggctCAGTCTTCATCCCAACACCACGGGCGACGTCTCACACATATATTTCTTCGTCgtctCTGCTTCCTCCTGGTCTGCATTTCCTGCTGCTGCTTTAGCCGCACCTCCTCCAGACTCAGGCtcccacctgcacacacacacacacacaca
>TU1439368
GGGTTTTATTCACGTGTTACTTTATATACATAGAAAGCATGAACGACGAGGGTAAAGAGAAGGAGTACAATGTTCTGCCGCCATTTTGTTTATATGAACAACAGCCATTTGTACAGTTCATTGTgatactcactaaacagagggATGGAAGTAAAGCATTTGTAGCCCACTTAACAATAGTTTATTTTTTACTAAATGAAACTAACATGAAATCTATTTGgtacaaaatataaaataatacagTGTGACACTGAAACATTGTAGACTTTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACAATGTGTGACCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCTGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCTGGACTTAGACAATGTGTGATCCCAGTGCTGGACTTAGACAATGTGTGACCCCAGTGCCGGACTTAGACATACAGGCAACAAGCATCATTCACATGATGATGCTGATGCGTCTGTATTTTAATGATAACTTcagcttcctgtctctctgtggctCAGTCTTCATCCCAACACCACGGGCGACGTCTCACACATATATTTCTTCGTCTG
>TU1439369
GGGTTTTATTCACGTGTTACTTTATATACATAGAAAGCATGAACGACGAGGGTAAAGAGAAGGAGTACAATGTTCTGCCGCCATTTTGTTTATATGAACAACAGCCATTTGTACAGTTCATTGTgatactcactaaacagagggATGGAAGTAAAGCATTTGTAGCCCACTTAACAATAGTTTATTTTTTACTAAATGAAACTAACATGAAATCTATTTGgtacaaaatataaaataatacagTGTGACACTGAAACATTGTAGACTTTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACAATGTGTGACCCCAGTGCTGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCTGGACTTAGAAAATGTGTGATCCCAGTGCCGGACTTAGACAATGTGTGATCCCAGTGCTGGACTTAGACAATGTGTGACCCCAGTGCCGGACTTAGACATACAGGCAACAAGCATCATTCACATGATGATGCTGATGCGTCTGTATTTTAATGATAACTTcagcttcctgtctctctgtggctCAGTCTTCATCCCAACACCACGGGCGACGTCTCACACATATATTTCTTCGTCgtctCTGCTTCCTCCTGGTCTGCATTTCCTGCTGCTGCTTTAGCCGCACCTCCTCCAGACTCAGGCtcccacctgcacacacacacacacacaca

Function

NR:

description
PREDICTED: uncharacterized protein LOC106613328 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1439365 False 575 lncRNA 0.41 3 13523016 13524112
TU1439366 False 987 lncRNA 0.46 4 13523016 13524334
TU1439367 False 987 lncRNA 0.46 4 13523016 13524334
TU1439368 False 923 lncRNA 0.45 4 13523016 13524112
TU1439369 True 929 lncRNA 0.46 4 13523016 13524334

Neighbor

gene id symbol gene type direction distance location
LOC110489613 LOC106590529 coding upstream 5078 13514799 ~ 13517938 (+)
LOC100135934 LOC106590529 coding upstream 17851 13496335 ~ 13505165 (+)
armc3 armc3 coding upstream 42264 13459209 ~ 13480871 (+)
LOC110489606 skida1 coding upstream 142659 13374081 ~ 13380357 (+)
LOC110489600 LOC106590541 coding upstream 378993 13140028 ~ 13144023 (+)
si:ch211-230g15.5 LOC106590521 coding downstream 8268 13532602 ~ 13551953 (+)
LOC110489618 LOC106590519 coding downstream 174943 13699277 ~ 13709450 (+)
LOC100135979 ck-2.1 coding downstream 198124 13722458 ~ 13725519 (+)
LOC118936270 LOC106590515 coding downstream 201945 13726279 ~ 13744753 (+)
LOC110490824 LOC106590516 coding downstream 222002 13746336 ~ 13758266 (+)
G1259831 NA non-coding upstream 30789 13482682 ~ 13492227 (+)
G1259784 LOC106578380 non-coding upstream 115691 13406282 ~ 13407325 (+)
G1259783 NA non-coding upstream 117847 13401651 ~ 13405169 (+)
G1259738 NA non-coding upstream 263577 13259036 ~ 13259439 (+)
G1259861 NA non-coding downstream 7040 13531374 ~ 13531617 (+)
G1259864 NA non-coding downstream 11490 13535824 ~ 13536234 (+)
G1259876 LOC105022019 non-coding downstream 48819 13573153 ~ 13576134 (+)
G1259875 LOC106590523 non-coding downstream 58235 13582569 ~ 13587128 (+)
G1259481 NA other upstream 338449 13184293 ~ 13184567 (+)
LOC110489589 LOC106590556 other upstream 859161 12645767 ~ 12669728 (+)
LOC110489591 LOC106592044 other upstream 883551 12562131 ~ 12639556 (+)
G1258375 NA other upstream 1617498 11905086 ~ 11905518 (+)
G1260013 NA other downstream 344981 13869315 ~ 13870230 (+)
G1260074 NA other downstream 437167 13961501 ~ 13961816 (+)
LOC110489635 LOC106590481 other downstream 686031 14186442 ~ 14217437 (+)
LOC110489644 NA other downstream 835763 14360048 ~ 14362944 (+)

Expression


Co-expression Network