G1259876 (LOC105022019)


Basic Information

Item Value
gene id G1259876
gene name LOC105022019
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13573153 ~ 13576134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1439401
TGTTTTGTTGATCTAATTTATTATCCTATCTCATGATGAAACACACTGAAGTTTGCAGTCCATCCACTGAAAAAAAGAAAGGTCTCTCAAACGACTTTCCCTGACACGCAGGTGACACGTGTGTGGGACCGGCCAGTCTCCAGTCCTACATGCTGGGGCAGGTGTGCGGAGCTTGGTTCTACTCGTCATTGTctgactcctcctcttcctggctGATCTGGAAGTATCTCAGCTCGTAGGTCTCCTTGTCTGACGCCACGACTCTCAGCCAATCACGGAGGTTGTTCTTCTTCAGGTACTTCTTGGTCAGGTATTTCAGGTACCTTTAGAGAACTGCTTCTGTGACGTGACGTTGATCTTGTTCTTCAGGCGGGCGATCTCGATTACATTCGCCAGATTTCCTGTCTTGCCGTTGACTTTTACCCTCTCTTTGAGGAATGTTTCCTGTTGGACAGAGCACAGTGACACTAGGGAAGAGAACCCTAGGGTTTGAGCTAGGGAATGGAGCCCTAGTAAAGTTGGCCGAGTCCAAAATGCCATCCTCCACAGGGTGGGTCAGGTCCAGGGTGAACTTCCAGGACACCCCCCTCTTGGTCCTCTTGACCACAGTCTGTTTCTTCTGCTTTAGCTAGGGAAAACAACCATGGCATTCAGATCATAGAAATATAAACGACGGGAATGATTCTGATCGCCATGACAGGCATTCCTCAATCTAATGTTCCTCCTGATTCTAAACCATGGCTCTCAGATAGAATAGGGATTAAGACAACATGATTCAGTTTTCCTTAGACTAGAGTAGTGTaatacaggggtgtcaaactcattccagagGGCCTAGTGTCTACTGGTTTTGGGGTTTTCATTTCAATTAAGAccaagacaaccaggtgaggggagcgCTTTACTAAATGGTGACCTTAATCCACCttaagtacaagggaggagcaaaatccTGCAGACACTCGCCCCTCCGTGGAATGAGAATAGCAAATTCCCCTTTATTATACGGCAGTGGATCTAATTCACACTGACCATCAATCCAAAGGtagatcaaatgtatttatgccATTGCAAGTGAAGAGAGGACCCCAAATGTATActtataaaataaacaaatattttaaatTGGGAAAACCTCTTGAATCTATGCTCGGAAATTACTTTAGAGCGTTTCTCAAACTCAGTGCTGGGGTGGACCGAGGGctgcacattttggttttagccctagcactacacagctgattcaaataatcaaaacgTGACAAAACTTgacattaataaaacctccctgcaacctaaaaatgtacaTTCCCTACACTGGCTAAATTTTCACTTCCGTTATCCGAACATTAAAAAAATGATATTTTAAAcggtcaggaaacgtatggctttgttcccagaaccaatgggaaaccaaaaacgtatGTTCCCACAACTTTCAAGGAAActaatgtgctagctgggaagggTTTGGAACCTCACCCTGGTAAGGTCATGGGTATGCTCAAAATGGCTGTCAGTCCTGACTTGAATGGCATTTTTGTTCGGCGGTTTGTACTTCTCATCAGGCTGTCAGTGAATAGATACAGCCTTTTCAAAATACAATCGCAGGAAATATGTTTGGAAAGCAAATTACAACTGGTGAAAAGACTAATTTGCCAGTTGAAGTTACATTTTTTTTCCTCAACTGACAAACCGCACTGCTTTTTCAAAGTAGTTCAGGCCTACCTTGAGACCATCACTGGTATGGTGAGAAGGCTACGCATATTTATGCTAtcttcattgggtgagtcagtatCACTGGAAAGTTGATTTAGTGGCCTATACTATTTATTTCCTCCCAATGTACTTTTTTAAAGActgagccaattgtgtgccaccctatgggactcccaatcctgGGGATGttatgcagcctggatttgaaccaggtactgcagtgccttagacagctgtgacACTCATTTGTGTCTCCCTTTTATTGGCCCTGGGCCAGGTCTTGACCATGGCCCAGATTCCCAAAAGCATTCTAAGGCTACATTTTAATCTTAAAATAAGATCCTATGGTTCTAACAATTAATTTAGCCTAAAATGCTTTTGGTAATCTGGGCCTAGGTAGTTTGAGTGTCAGATTAGCCACTCTTGTGTAGTATTACAAAAAATAGTCTCCTGTCATGTAGGCCTAAATGAATTAGAAT
>TU1439402
TGTTTTGTTGATCTAATTTATTATCCTATCTCATGATGAAACACACTGAAGTTTGCAGTCCATCCACTGAAAAAAAGAAAGGTCTCTCAAACGACTTTCCCTGACACGCAGGTGACACGTGTGTGGGACCGGCCAGTCTCCAGTCCTACATGCTGGGGCAGGTGTGCGGAGCTTGGTTCTACTCGTCATTGTctgactcctcctcttcctggctGATCTGGAAGTATCTCAGCTCGTAGGTCTCCTTGTCTGACGCCACGACTCTCAGCCAATCACGGAGGTTGTTCTTCTTCAGGTACTTCTTGGTCAGGTATTTCAGGTACCTCTTAGAGAACTGCTTCTGTGACGTGACGTTGATCTTGTTCTTCAGGCGGGCGATCTCGATTACATTCGCCAGATTTCCTGTCTTGCCGTTGACTTTTACCCTCTCTTTGAGGAATGTTTCAAAGTTGGCCGAGTCCAAAATGCCATCCTCCACAGGGTGGGTCAGGTCCAGGGTGAACTTCCAGGACACCCCCCTCTTGGTCCTCTTGACCACAGTCTGTTTCTTCTGCTTTAGCGGTGCCATCTTGAGTGTGCGGAGTAGAAAGGAAGTTGCG

Function

NR:

description
PREDICTED: 60S ribosomal protein L22-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1439401 False 2198 lncRNA 0.43 3 13573153 13575615
TU1439402 True 599 lncRNA 0.50 4 13573153 13576134

Neighbor

gene id symbol gene type direction distance location
si:ch211-230g15.5 LOC106590521 coding upstream 21200 13532602 ~ 13551953 (+)
LOC110489613 LOC106590529 coding upstream 55215 13514799 ~ 13517938 (+)
LOC100135934 LOC106590529 coding upstream 67988 13496335 ~ 13505165 (+)
armc3 armc3 coding upstream 92401 13459209 ~ 13480871 (+)
LOC110489606 skida1 coding upstream 192796 13374081 ~ 13380357 (+)
LOC110489618 LOC106590519 coding downstream 123143 13699277 ~ 13709450 (+)
LOC100135979 ck-2.1 coding downstream 146324 13722458 ~ 13725519 (+)
LOC118936270 LOC106590515 coding downstream 150145 13726279 ~ 13744753 (+)
LOC110490824 LOC106590516 coding downstream 170202 13746336 ~ 13758266 (+)
LOC110489621 NA coding downstream 305527 13881661 ~ 13913203 (+)
G1259864 NA non-coding upstream 36919 13535824 ~ 13536234 (+)
G1259861 NA non-coding upstream 41536 13531374 ~ 13531617 (+)
G1259854 NA non-coding upstream 48819 13523016 ~ 13524334 (+)
G1259831 NA non-coding upstream 80926 13482682 ~ 13492227 (+)
G1259875 LOC106590523 non-coding downstream 6435 13582569 ~ 13587128 (+)
G1259908 NA non-coding downstream 42569 13618703 ~ 13622599 (+)
G1259931 NA non-coding downstream 91998 13668132 ~ 13668348 (+)
G1259980 LOC107549743 non-coding downstream 224665 13800799 ~ 13824401 (+)
G1260029 NA non-coding downstream 267597 13843731 ~ 13844636 (+)
G1259481 NA other upstream 388586 13184293 ~ 13184567 (+)
LOC110489589 LOC106590556 other upstream 909298 12645767 ~ 12669728 (+)
LOC110489591 LOC106592044 other upstream 933688 12562131 ~ 12639556 (+)
G1258375 NA other upstream 1667635 11905086 ~ 11905518 (+)
G1260013 NA other downstream 293181 13869315 ~ 13870230 (+)
G1260074 NA other downstream 385367 13961501 ~ 13961816 (+)
LOC110489635 LOC106590481 other downstream 634231 14186442 ~ 14217437 (+)
LOC110489644 NA other downstream 783963 14360048 ~ 14362944 (+)

Expression


Co-expression Network