G1259875 (LOC106590523)


Basic Information

Item Value
gene id G1259875
gene name LOC106590523
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13582569 ~ 13587128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1439397
ccccgatcgaGCCCCTCACACACCTCACTGCAAaatgccttccagaacattctacGCCGCCATGCCAACGCCTCACTCTTTCCGACTATTATGGGATGCCCAGGGCGGGGCTAGGTTGCCATGGTGATAGGCAAGCGCACTGGGCCCTCCGGCTTTCTAAACAGACAGAGCGGCATTGACAAGAGAAATCACTGAAGTTTGGTTCCATATTTAGCATCTTTTCTCTAATGTTCTTTCTTCATATCGAAGTGTTTTGAAATGCTGGAGTGGTACTGTTAAGACTGCTTGTTAAGTGCTAGCCACCAGCGTTCCCACGGTTTGGGAGAAAAGCATCGGAGTTGTCTGATCAGCCAGAGCAGAGAGGCCATGCTGGGAAGCAGCAGTATGGCAGCCAGAGGGACAACCCTAACGTAGTTCAATGTCAGTAAAAGGGGCCCCAAGCCCCCCCTCCCACCATTCAAAcagctcccccctccctctaaAAAGGCATCAGACGAGCTCAATTATAAGGAATATAAAAAACTTATCATAAAAAAGCTGGATCCCATCATTATTTTAAACATTCAGGAATGTATGTGGCAAGACAAACATCTCGAAGGCAAAAATAAACAGGAATGAGGAAGAAGTCAAAAAAAGAATCTATATTTCACCAATAAGTACTTTTCTTTATATAGTAGATTATGTAGAACTAAACAAAACCTCAGTGATCCGGCAGAATGCCAGCCAACACAGCGAGCGTGCCGCAGTAACGCTGGGACAGTCCGACAGCGtcggagagagagaaaccaaaaaACGAGAGGGGAAAAAACAAAGGAGTAATCACAACAGAATGATTGAGGTTGTCTGTGAAGGCCGTCGCTTTGGTGACAGAAGAACCAATAAGAATACTAGAGACTGGTTGTGGGTGGAGTTTGTTGCCTGGGCAGGTCAGTCCTGTCTTTCTATTTGCCACCGGTCATCTGCTTAATGGCCACAGCACACTCCTCCCCCATAGCAGACAGCACAGAGACCAGGATATCCTCTGAAGCGGCAAACTTCTGCTCAATCTCCTTGCCCAGGTCTGAATCAGGCACGCGCAGGTCCTCCCTCACGTCTCCATTGTCACCCATGAGGGACATGAACCCATCAGTGATGTTCAACAGCTGGAACTCATTCCTCTTGATGTGGGGCACGTCCATGTTGTGGGTGGAGGGGCACATGTCCTCATACTTCTTGTTGGTGAAGATGTCAATGCCCACCATGTTAACCTAAAGAGGACAGAGAGTTTTACTACACCACTAACAGCAGTGTCATAACATGCTAAGTAAAACCTCATTTGACGAGTCAAAAGTTATGATTGGAGAATTCAGACAAAGCCCTTATATGGGTAAATTACTACAGATGTGGACAACGCATGTACTATTATGGGTGCTGGTTACAGAACTCAACTGTTTTATAT
>TU1439398
ccccgatcgaGCCCCTCACACACCTCACTGCAAaatgccttccagaacattctacGCCGCCATGCCAACGCCTCACTCTTTCCGACTATTATGGGATGCCCAGGGCGGGGCTAGGTTGCCATGGTGATAGGCAAGCGCACTGGGCCCTCCGGCTTTCTAAACAGACAGAGCGGCATTGACAAGAGAAATCACTGAAGTTTGGTTCCATATTTAGCATCTTTTCTCTAATGTTCTTTCTTCATATCGAAGTGTTTTGAAATGCTGGAGTGGTACTGTTAAGACTGCTTGTTAAGTGCTAGCCACCAGCGTTCCCACGGTTTGGGAGAAAAGCATCGGAGTTGTCTGATCAGCCAGAGCAGAGAGGCCATGCTGGGAAGCAGCAGTATGGCAGCCAGAGGGACAACCCTAACGTAGTTCAATGTCAGTAAAAGGGGCCCCAAGCCCCCCCTCCCACCATTCAAAcagctcccccctccctctaaAAAGGCATCAGACGAGCTCAATTATAAGGAATATAAAAAACTTATCATAAAAAAGCTGGATCCCATCATTATTTTAAACATTCAGGAATGTATGTGGCAAGACAAACATCTCGAAGGCAAAAATAAACAGGAATGAGGAAGAAGTCAAAAAAAGAATCTATATTTCACCAATAAGTACTTTTCTTTATATAGTAGATTATGTAGAACTAAACAAAACCTCAGTGATCCGGCAGAATGCCAGCCAACACAGCGAGCGTGCCGCAGTAACGCTGGGACAGTCCGACAGCGtcggagagagagaaaccaaaaaACGAGAGGGGAAAAAACAAAGGAGTAATCACAACAGAATGATTGAGGTTGTCTGTGAAGGCCGTCGCTTTGGTGACAGAAGAACCAATAAGAATACTAGAGACTGGTTGTGGGTGGAGTTTGTTGCCTGGGCAGGTCAGTCCTGTCTTTCTATTTGCCACCGGTCTGAATCAGGCACGCGCAGGTCCTCCCTCACGTCTCCATTGTCACCCATGAGGGACATGAACCCATCAGTGATGTTCAACAGCTGGAAACACAAGCACCATGTTACATCTACAGTCGGACACATGAAGGCACATTCCAGGTAGTCTTCATTTTAGTCACCGTGCAGATCAGAACGCAATAAGAAAAATAAAGACAAGCGATGGTGTGAGAGGTGAACATGTTGGGAAGTGTGTGTTAATTTGTTTTGTTAGCCATCACATCAGGTGTGTGACCTGGTCACTGTGGTGTAACGGCCATCTCCAAGGAGATCTCTGTAGCAAGAACCATTCACACTCACACCACGGGTATTGGGTGCAGTGCTGGGTGATCGTCGTGCATTAACACAGGGGAACGCTCCAATGCCAACCAGTGTGAGCAAATATACAATTTACAGTTACAttaagtggaactgacagcgtt

Function

NR:

description
eukaryotic translation initiation factor 5A-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1439397 False 1438 lncRNA 0.47 3 13582569 13587128
TU1439398 True 1415 lncRNA 0.47 2 13582569 13584198

Neighbor

gene id symbol gene type direction distance location
si:ch211-230g15.5 LOC106590521 coding upstream 30616 13532602 ~ 13551953 (+)
LOC110489613 LOC106590529 coding upstream 64631 13514799 ~ 13517938 (+)
LOC100135934 LOC106590529 coding upstream 77404 13496335 ~ 13505165 (+)
armc3 armc3 coding upstream 101817 13459209 ~ 13480871 (+)
LOC110489606 skida1 coding upstream 202212 13374081 ~ 13380357 (+)
LOC110489618 LOC106590519 coding downstream 112149 13699277 ~ 13709450 (+)
LOC100135979 ck-2.1 coding downstream 135330 13722458 ~ 13725519 (+)
LOC118936270 LOC106590515 coding downstream 139151 13726279 ~ 13744753 (+)
LOC110490824 LOC106590516 coding downstream 159208 13746336 ~ 13758266 (+)
LOC110489621 NA coding downstream 294533 13881661 ~ 13913203 (+)
G1259876 LOC105022019 non-coding upstream 6435 13573153 ~ 13576134 (+)
G1259864 NA non-coding upstream 46335 13535824 ~ 13536234 (+)
G1259861 NA non-coding upstream 50952 13531374 ~ 13531617 (+)
G1259854 NA non-coding upstream 58235 13523016 ~ 13524334 (+)
G1259908 NA non-coding downstream 31575 13618703 ~ 13622599 (+)
G1259931 NA non-coding downstream 81004 13668132 ~ 13668348 (+)
G1259980 LOC107549743 non-coding downstream 213671 13800799 ~ 13824401 (+)
G1260029 NA non-coding downstream 256603 13843731 ~ 13844636 (+)
G1260030 NA non-coding downstream 260120 13847248 ~ 13847863 (+)
G1259481 NA other upstream 398002 13184293 ~ 13184567 (+)
LOC110489589 LOC106590556 other upstream 918714 12645767 ~ 12669728 (+)
LOC110489591 LOC106592044 other upstream 943104 12562131 ~ 12639556 (+)
G1258375 NA other upstream 1677051 11905086 ~ 11905518 (+)
G1260013 NA other downstream 282187 13869315 ~ 13870230 (+)
G1260074 NA other downstream 374373 13961501 ~ 13961816 (+)
LOC110489635 LOC106590481 other downstream 623237 14186442 ~ 14217437 (+)
LOC110489644 NA other downstream 772969 14360048 ~ 14362944 (+)

Expression


Co-expression Network