G1260013


Basic Information

Item Value
gene id G1260013
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13869315 ~ 13870230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1439561
CAAAAGAtttgtggtctgatgagacaaaaatgtaactctttggcctgaatgcaaagtgctatgtctggagaaaattAGGCATAactcatcacccgtctaacacaTTCCTatcgtgaagcatggtggtggcagcatcatgctatggggatgcttttcagcgacagggactgggagactggtaaggatagatgggaacaatgaatggagccaaatgcaggcaaatccttgatgagaacctgcttcagagtgcaaacgaccttagactgggaccaagatttacgttccaacaggacaatgaccccaagcacacagccaaagcaacgctggaatggcttcagaataagaatgtgaaagtccttgagtggcccagccaaagcccagacttcaatCCTATTAAAAATCTGTGGAAAAATGTGAAGATTGCTGTCCACcgccgctccccatctaacccaTTAACAGAGTTTGAGAAAATCTGGAAGGAAGAacgggagaaaatccccaaatccagatgtgcaaagctgatacagacatacccaagacgactcaaagctgatacagacatacccaagacgactcaaagctgatacagacatacccaagatgactcaaagctgatacagacatacccaagacgactcaaagctgatacagacatacccaagacgactcaaagctgatacagacatacccaagacgactcaaagctgatacagacatacccaagacgactcaaagctgatacagacatacccaagacgactcaaagctgatacagacatacccaagacgactcaaagctgatgcagacatacccaagacgactcaaagctgatgcagacatacccaagacaactcaaagctgatacagacatatccAAGACGattcaaagctgatacagacatacccaagacgact

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1439561 True 916 TUCP 0.45 1 13869315 13870230

Neighbor

gene id symbol gene type direction distance location
LOC110490824 LOC106590516 coding upstream 111049 13746336 ~ 13758266 (+)
LOC118936270 LOC106590515 coding upstream 124562 13726279 ~ 13744753 (+)
LOC100135979 ck-2.1 coding upstream 143796 13722458 ~ 13725519 (+)
LOC110489618 LOC106590519 coding upstream 159865 13699277 ~ 13709450 (+)
si:ch211-230g15.5 LOC106590521 coding upstream 317362 13532602 ~ 13551953 (+)
LOC110489621 NA coding downstream 11431 13881661 ~ 13913203 (+)
LOC110489622 LOC106596459 coding downstream 61434 13931664 ~ 13948329 (+)
LOC118938945 NA coding downstream 88812 13959042 ~ 13960551 (+)
LOC110490921 LOC106590500 coding downstream 118126 13988356 ~ 13999764 (+)
LOC110489629 LOC106590463 coding downstream 182796 14053026 ~ 14057431 (+)
G1260042 NA non-coding upstream 5348 13863615 ~ 13863967 (+)
G1260041 NA non-coding upstream 6248 13862123 ~ 13863067 (+)
G1260040 NA non-coding upstream 8554 13860456 ~ 13860761 (+)
G1260039 NA non-coding upstream 10171 13858888 ~ 13859144 (+)
G1260036 NA non-coding upstream 12585 13856449 ~ 13856730 (+)
G1260021 NA non-coding downstream 45444 13915674 ~ 13916712 (+)
G1259894 LOC106590504 non-coding downstream 133771 14004001 ~ 14004599 (+)
G1259884 NA non-coding downstream 143824 14014054 ~ 14016421 (+)
G1260117 LOC106590479 non-coding downstream 194792 14065022 ~ 14065735 (+)
armc3 armc3 other upstream 388444 13459209 ~ 13480871 (+)
G1259481 NA other upstream 684748 13184293 ~ 13184567 (+)
LOC110489589 LOC106590556 other upstream 1205460 12645767 ~ 12669728 (+)
LOC110489591 LOC106592044 other upstream 1229850 12562131 ~ 12639556 (+)
G1260074 NA other downstream 91271 13961501 ~ 13961816 (+)
LOC110489635 LOC106590481 other downstream 340135 14186442 ~ 14217437 (+)
LOC110489644 NA other downstream 489867 14360048 ~ 14362944 (+)
G1260745 NA other downstream 796429 14666659 ~ 14668539 (+)
LOC110489673 LOC106590441 other downstream 1035190 14905377 ~ 14914892 (+)

Expression


Co-expression Network