XLOC_003178 (CU855733.1)


Basic Information

Item Value
gene id XLOC_003178
gene name CU855733.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5531443 ~ 5531576 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006262
ATTAGCAAGCATTGTATTGTGAGTTTGATTGGGTTAGTATATGTGAGAATGATGGTCacacactgaagctaagcaaggctgcgctcggtcagtacctggatgggagaccttatgggaaagctagattgctgctg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000084678

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006262 True 134 rRNA 0.46 1 5531443 5531576

Neighbor

gene id symbol gene type direction distance location
XLOC_003177 slc35e1 coding upstream 15521 5499661 ~ 5515922 (+)
XLOC_003175 cse1l coding upstream 38252 5468629 ~ 5493191 (+)
XLOC_003176 CR559931.1 coding upstream 49559 5481753 ~ 5481884 (+)
XLOC_003174 ptprga coding upstream 68189 4953964 ~ 5463254 (+)
XLOC_003173 camk1b coding upstream 1398781 4026229 ~ 4132662 (+)
XLOC_003179 APBA3 coding downstream 33506 5565082 ~ 5659681 (+)
XLOC_003180 NA coding downstream 70764 5602340 ~ 5602721 (+)
XLOC_003181 r3hdm4 coding downstream 134749 5666325 ~ 5674923 (+)
XLOC_003182 arid3a coding downstream 150186 5681762 ~ 5810958 (+)
XLOC_003183 ctdspl3 coding downstream 285626 5817202 ~ 5836286 (+)
XLOC_003250 BX324177.11 misc downstream 5814227 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 5841310 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 5854786 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 5886457 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 5897817 11429393 ~ 11429689 (+)
XLOC_003170 NA non-coding upstream 1748318 3771266 ~ 3783125 (+)
XLOC_003169 NA non-coding upstream 1795640 3615750 ~ 3735803 (+)
XLOC_003164 NA non-coding upstream 2197729 3331113 ~ 3333714 (+)
XLOC_003160 NA non-coding upstream 2324745 3203487 ~ 3206698 (+)
XLOC_003187 NA non-coding downstream 423689 5955265 ~ 5966389 (+)
XLOC_003189 CT573239.2 non-coding downstream 538299 6069875 ~ 6074783 (+)
XLOC_003195 BX248501.1 non-coding downstream 674393 6205969 ~ 6224120 (+)
XLOC_003198 AL840638.1 non-coding downstream 791422 6322998 ~ 6324302 (+)

Expression


Co-expression Network