XLOC_031780


Basic Information

Item Value
gene id XLOC_031780
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 3575051 ~ 3581291 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064599
CATTCAAGAAATTCTACATTCCCGCCAAATTTTTTAACTAGTTTTCACCAGTCATTGGTTTTCACCCAAGGCGTGTAAGTTTTATTGGCTGCTAGACcaataaaatattgaatttatGTCACTTACGACGGAAACCCTGACCTGACCAACACTTACCGTAATAGATTTGTTGAACTGCGTTGAAAATATGGCGTCTTGACAAAATGGCAGCCACCCCTGAAGATAGatataacACATGGGACATTCTCTGGATCCTTTGCTGAAAGAAGGATTTTGAGGAATTGAAACTTTGGTTCTTCAAACTCTGGCCTGATGTCTGAACTGTGATCCCGGTGAGTATTTGGACACCAGAGCTTTCCTCCACTGCTTTGGCCAGTTTCCCATGTTGAGAACATTGACATATTGAAACTGGCAGTTGAGTTTCTTCCCTTCAGCCTGCGGCCGGACACAACAACACCTTTTGTGTTGGTTTAATCCCGGGGCTCCACCGTCTTCGCAACTCTGGGGGATAAAAGCACCATCAAACCACTACTTTAGGGGGAAAATCTTTCCTAATCCTAGCTTTACTTAAAcaaaaggaggaaaaaaaaacaagagggtGGAGAGAAATTGTGCAGAAACAGGGCAAGACCCGGAGCAAAGATCCTTACAAACCATTTTCCTGGAGAAACTAAGCATTTCTGACAGGCTTTCAGGGCCACTATAACACAAAGTATCAAGTCACAGAGAAAGTTCTACACGTTAGATATTTGACTAgttaaatgataaactttcacagGAGATTATTTCACAGGAGAATTATGTTAATTTTCCTTAGCGTGAACTGAGCAATtctatgcaaatgtcaaccttaccACGAAAAacttgtttttaccaaaatagctGTAGTTTTGTGTAGGCTTTCATTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064599 True 909 lncRNA 0.41 2 3575051 3581291

Neighbor

gene id symbol gene type direction distance location
XLOC_031779 faah coding upstream 34784 3516695 ~ 3540267 (+)
XLOC_031778 rad54l coding upstream 83694 3473657 ~ 3491357 (+)
XLOC_031777 artna coding upstream 115711 3459026 ~ 3459340 (+)
XLOC_031776 NA coding upstream 152318 3419776 ~ 3422733 (+)
XLOC_031775 st3gal3a coding upstream 169556 3334392 ~ 3405495 (+)
XLOC_031781 col28a2b coding downstream 59090 3640381 ~ 3675797 (+)
XLOC_031782 klhl41b coding downstream 99360 3680651 ~ 3692280 (+)
XLOC_031783 ppig coding downstream 112150 3693441 ~ 3708386 (+)
XLOC_031784 phospho2 coding downstream 129574 3710865 ~ 3713097 (+)
XLOC_031785 ssb coding downstream 135375 3716666 ~ 3728694 (+)
XLOC_031773 BX255959.1 non-coding upstream 409329 3165608 ~ 3165722 (+)
XLOC_031771 NA non-coding upstream 954713 2617389 ~ 2620338 (+)
XLOC_031770 LO018168.1 non-coding upstream 981551 2519973 ~ 2593500 (+)
XLOC_031769 LO017858.1 non-coding upstream 1068599 2491733 ~ 2506452 (+)
XLOC_031787 NA non-coding downstream 234758 3816049 ~ 3826125 (+)
XLOC_031790 NA non-coding downstream 296381 3877672 ~ 3879215 (+)
XLOC_031792 CU914157.1 non-coding downstream 420026 4001317 ~ 4004456 (+)
XLOC_031798 NA non-coding downstream 936867 4518158 ~ 4520247 (+)
XLOC_031802 NA non-coding downstream 1616978 5198269 ~ 5399444 (+)

Expression


Co-expression Network