G1260497 (LOC106579465)


Basic Information

Item Value
gene id G1260497
gene name LOC106579465
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14107581 ~ 14108446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1440215
CCCTCTGTCAGGGAAGAGACACTGGTGGGATACTAGAATAGGATCAGTCCTCTGTCAGGGAAGAGACACTGGTGGGATACTAGAATAGGATCAGTCCTCAGACATTAGATTGTCTGAGACAAAGTGATTCTTAACACTCTAAGCTCTTAAACCAGCTATCACTTTTTCATCTCTGCACCAATCAGAACTCCTCTTCTCCAGCTCTATAACCAATCATAGTTCACCTTCCCGGCTCTGCAGTAGTCTGCAGCAAACTTGATGGCCTCCCTCACACACAGCACGTCCATGCCATCCACcttgATTCCAGGTATATAGTCTCCTCTCTTGAAGTAGTCAGTGCTAGCAGAGGATCTCTCTACAGACGTCCCCATGCCAAACTTGTTGTTCTCACAGATGAAGATACACGGCAGCTTCCACAGAGCCGCCATGTTGAAGGACTCAAAGATCTGGCCCTGATTGGACAAGAGCTGGTTGGCTGCTCCGTCTCCGTACAGCGCCACGCACACCTGGTTGTTGCCCTGGTACTGACAGGCTAGTGCCACACCAGCACCCAATGGaacCTGAGCCCCCACGATTCCATTCCCTCCATAGAAGTGTTTAGCGTACATGTGCATAGAACCACCTTTGCCCTTGGCCACACCTCCTCTACGACCTG

Function

NR:

description
pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1440215 True 655 lncRNA 0.51 4 14107581 14108446

Neighbor

gene id symbol gene type direction distance location
LOC110489629 LOC106590463 coding upstream 50150 14053026 ~ 14057431 (+)
LOC110490921 LOC106590500 coding upstream 107817 13988356 ~ 13999764 (+)
LOC118938945 NA coding upstream 147030 13959042 ~ 13960551 (+)
LOC110489622 LOC106596459 coding upstream 159252 13931664 ~ 13948329 (+)
LOC110489621 NA coding upstream 194378 13881661 ~ 13913203 (+)
LOC110489635 LOC106590481 coding downstream 77996 14186442 ~ 14217437 (+)
sat1 LOC106590486 coding downstream 142980 14251426 ~ 14254054 (+)
LOC110489641 LOC106590489 coding downstream 190981 14299427 ~ 14311302 (+)
apodb apod coding downstream 243372 14351818 ~ 14356250 (+)
LOC110489644 NA coding downstream 251602 14360048 ~ 14362944 (+)
G1260117 LOC106590479 non-coding upstream 41846 14065022 ~ 14065735 (+)
G1259884 NA non-coding upstream 91160 14014054 ~ 14016421 (+)
G1259894 LOC106590504 non-coding upstream 102982 14004001 ~ 14004599 (+)
G1260021 NA non-coding upstream 190869 13915674 ~ 13916712 (+)
G1260590 klhl15 non-coding downstream 165930 14274376 ~ 14277808 (+)
G1260629 NA non-coding downstream 254826 14363272 ~ 14364161 (+)
G1260649 NA non-coding downstream 270143 14378589 ~ 14381681 (+)
G1260638 NA non-coding downstream 304391 14412837 ~ 14422434 (+)
G1260631 NA non-coding downstream 336705 14445151 ~ 14451109 (+)
G1260074 NA other upstream 145765 13961501 ~ 13961816 (+)
G1260013 NA other upstream 237351 13869315 ~ 13870230 (+)
LOC110490824 LOC106590516 other upstream 349379 13746336 ~ 13758266 (+)
armc3 armc3 other upstream 626710 13459209 ~ 13480871 (+)
G1259481 NA other upstream 923014 13184293 ~ 13184567 (+)
G1260745 NA other downstream 558213 14666659 ~ 14668539 (+)
LOC110489673 LOC106590441 other downstream 796974 14905377 ~ 14914892 (+)
G1260946 LOC106590444 other downstream 912546 15020992 ~ 15022053 (+)

Expression


Co-expression Network