G1260590 (klhl15)


Basic Information

Item Value
gene id G1260590
gene name klhl15
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14274376 ~ 14277808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1440313
TGGATATAAATTACAAAGTGTTTGAAATAGCAGTGTCTACTCAGATTATAGTAAATACATTGTTTATCTGATTTATTTTTTCTTTTAGAAATAGTCATCGTACAGGGTGTTTTTAATCCACAATATTCTATAGTTTTATCCTACTGAGACTGAGGGCTGATTATAAATGCTGagctatgacagacagacaagccCTGTCCCAAATAAAAACAGCAGGACTAATACACATGTTGACCAGCAGAGGGAAACCGCTGTTTAAAGACTGAAGTTTGGCATAATATTGGCCCGTTTGCCAGACGCATACTATtcctggacaaaaaaaaaaccacTTTCAGTGGAGATTCTCTATTGCGCATTGCTTTTTAGTCCAGAAGTAGGTTTACCGTCTGGAAAACCAACTGGGCCTAAGTGTTCATGATATCGATAGTCATTTTTACATGTAAAATATAGACAAAGACACAGATGGGAGATGACAGAATACCTTATTACATCTAAGCTGCCTTAGTGATGTTAACAGTCCCTGTTTATACACTACTGCACACATCTTATTCTGTCAAATGGAGCCACTGCCCGTGAGGGGGGTctgcctggtatttatacagtaccACAAACCGCTCTGTGACTTTTTGACTGGGGGAAAAGGCATGTTTGTATGCTACTGCATAAATACTGCACTGCAGGTTTGATTGAATAGAGCCGTGAGTGCAGGCAAGAGGACGCTGggtagaggaaaggagggagggaaagaagagggAAATGTGGAATCAGAAAGAGTGACACAATCTCTCAAAGTATCATAAAGACTATGCTCTATTGAAAGGCAAATCACATCAACCCAACATCCCGACCACAATCACACAGAGTTAGCTGGTGGTGGATGGATCTccataaacacacatacaaaaaaaATGGCTGACAGACAGAACTGCAGAAGACCGTGCTTTAGCCCTTTTCATTGTTGTTCATTAAAAGAAGAACGAGAGAGATGAGCAGGTTCATATGCTGCAGCTGGctccatcagacagacagacagacagacagagacaggactaAGCCAGGGTAGGGCTTTACAAAGTAGGATCCATAAGTTAGCCAGATCACCTTTGACACTCAAAATATGATCAAGCAAAAATAGTTAATGTGTTACTGGGAGTTTTGAGCCTATTTCAAATTGATCTTTAATATTAACTCCTTTTCTGTATCAACTTATTTAGTTTTTTTGAATCAAAAGTTGTTTCTGGTTCATTTCTGTGGCCAACTCCTACCATCTAACACACCCTCGTCGTCTGCCACAGCAACACTCAGAGCAGATGGTTAACGTCAATAAATAAAGTGAAATCTTACATACAGTACTGCCAGAGAGACGGGGACCTTCACACTGCAGTCATCCCTGACCTCTGAACTGTTACATGGCTCTCTGTCAGCAGGACAGTGTTATTGCAGTGTAGTCATGACAACGCTAAATCATCACCATGATCATCTTTCTCACAATCCCAATAGTATGATGAGTgcatattttttaatattttgcTCATTcatgtatcacacacacacacactccagctcCACAGACTAATGGTGCTTTCAAGAGAACTGggaaggtcaaatcatgacgtcagtgaccTTCAGATCGGAAAGTCAGAGCTTTAAGATGATCCCAGAGTTTCCGACTTTCGAATTCCGAGttagatgaccgttcaaaactatttttccccAGTCGGAGGTCGCTCCGCCCcgatttcccagttgtcttgaacacacgTCTTGAAGTCAGAGGtaggagatttccgagttcccagttgtcttgaaagcggCATCAGAGAAAGGGTTACAGAGAGACTAGATGACATCACATGAACATGACACAGCATGGttgagacatacagacagacatggtTCAGACCAATGACGTgaataaaccctggattgctgatgctatcaATTAGCCAATAAAATTTACAAAAtcacatgtatttaagtatttctttgttgtagtggggacagtaacattggTACTCTCTAAAGTACTTACTGTAAGGAATATGTTTTTATCAaacctttttttgtatttttagttCACATAATTAACATATATTATAATATACCAGTAAAAAACGTGTAGACATTGAAACATTTATTTCTATAGCTTCCCACCCAAAATGGCTTCAATACAGCGCCCCACTGTCAGTCATCCAGGGTTTATACATTATTAGTTCAGTCAGACAGGGCTTGAAACGGAATCATAATAACAATATGAAACTGACCTCAGTCCAAAATAAACCAGCTGAATCATGAAAAATCTTCTCAATTTTTCCCTTTTTCTGAAAAGCTTATTTTGAAACAGACCAGCTTGAGTTGCCCACCACCACTGATCACTAGCAAAGCTCAATTTTCTGCCCGTGTGGACAGATTACTATGGCATGTTTAGTTCAGTCTGTGTCTAGTTGAAAAGCTTCTGTGTTAGAGAGTGTTAGTGTCACACCTGTAAACACCAATCCTCCACCTCCACGCCTGGGGCCTGTAGGAGGAGTTGGTCTTAAAAGGGGGGCATTCCCAAACCTTAAAGGGGTGTGTCTGAACTGAACCAGACCTCAGCTGCAGCGCCGGACGTGCTCCAGGACGTACTCAGGGAAGTGCAGAGTGCAGACCTGCAGCCCATCCAGTTTGCAAGGCATCCTGGGATACTCGTCCTCCTTCCACTTGTTGTCATCGGGGTCAAAGGTCAGGATGGAGTCAGAGTAATGTCCGTTATAGCAGAGGCCCCCCAGTACCATGATCTGTCTGTCCAGCACCGCGACGCCATGCCCACTGCGCCCGATGGGCATCGACGCCAGGATGGTCCACTCGTCTGTCTCAGGGTCGTAAACCTCCGTGGACGGGCAGCCCTGCGACTCGAATGACGCCCGgaggatcacacacacacccccgaaCACGTACAGCTTCCCGTTATGGGAGATCATCTTGTGGAAGCAGCGAGCGTAATTCATCTTCGACTTGTTCTCCcagcagctggtgtgtgtgttggggaggaggggggtgcgGGCTGAACGCGTCCTGTGTGTGTCCGTTGTTCCCGCAGAGCCTGCTACACACAACCCTCCCCCTGCATCCAGTCCAGGGtcgaacacacacacctgtttggaGGTGGATGAGGAGGTGATTCCTCCGGTGATATAGAGTTTACCGTTTAGGACCGTGCCCTCGTGACCGTACTTGTTGACCGGGTACGGATCCACAAACTCCCAGCGGTCCGCCGTGATGTCATAGCGTTCCGTGGAGTAAAATGTCTCATCCCGCGTCCGCCCAGCCACCGCGTAGATGAACTTACCGATGACCCCCACTGCAAACTCTGACC
>TU1440314
TGGATATAAATTACAAAGTGTTTGAAATAGCAGTGTCTACTCAGATTATAGTAAATACATTGTTTATCTGATTTATTTTTTCTTTTAGAAATAGTCATCGTACAGGGTGTTTTTAATCCACAATATTCTATAGTTTTATCCTACTGAGACTGAGGGCTGATTATAAATGCTGagctatgacagacagacaagccCTGTCCCAAATAAAAACAGCAGGACTAATACACATGTTGACCAGCAGAGGGAAACCGCTGTTTAAAGACTGAAGTTTGGCATAATATTGGCCCGTTTGCCAGACGCATACTATtcctggacaaaaaaaaaaccacTTTCAGTGGAGATTCTCTATTGCGCATTGCTTTTTAGTCCAGAAGTAGGTTTACCGTCTGGAAAACCAACTGGGCCTAAGTGTTCATGATATCGATAGTCATTTTTACATGTAAAATATAGACAAAGACACAGATGGGAGATGACAGAATACCTTATTACATCTAAGCTGCCTTAGTGATGTTAACAGTCCCTGTTTATACACTACTGCACACATCTTATTCTGTCAAATGGAGCCACTGCCCGTGAGGGGGGTctgcctggtatttatacagtaccACAAACCGCTCTGTGACTTTTTGACTGGGGGAAAAGGCATGTTTGTATGCTACTGCATAAATACTGCACTGCAGGTTTGATTGAATAGAGCCGTGAGTGCAGGCAAGAGGACGCTGggtagaggaaaggagggagggaaagaagagggAAATGTGGAATCAGAAAGAGTGACACAATCTCTCAAAGTATCATAAAGACTATGCTCTATTGAAAGGCAAATCACATCAACCCAACATCCCGACCACAATCACACAGAGTTAGCTGGTGGTGGATGGATCTccataaacacacatacaaaaaaaATGGCTGACAGACAGAACTGCAGAAGACCGTGCTTTAGCCCTTTTCATTGTTGTTCATTAAAAGAAGAACGAGAGAGATGAGCAGGTTCATATGCTGCAGCTGGctccatcagacagacagacagacagacagagacaggactaAGCCAGGGTAGGGCTTTACAAAGTAGGATCCATAAGTTAGCCAGATCACCTTTGACACTCAAAATATGATCAAGCAAAAATAGTTAATGTGTTACTGGGAGTTTTGAGCCTATTTCAAATTGATCTTTAATATTAACTCCTTTTCTGTATCAACTTATTTAGTTTTTTTGAATCAAAAGTTGTTTCTGGTTCATTTCTGTGGCCAACTCCTACCATCTAACACACCCTCGTCGTCTGCCACAGCAACACTCAGAGCAGATGGTTAACGTCAATAAATAAAGTGAAATCTTACATACAGTACTGCCAGAGAGACGGGGACCTTCACACTGCAGTCATCCCTGACCTCTGAACTGTTACATGGCTCTCTGTCAGCAGGACAGTGTTATTGCAGTGTAGTCATGACAACGCTAAATCATCACCATGATCATCTTTCTCACAATCCCAATAGTATGATGAGTgcatattttttaatattttgcTCATTcatgtatcacacacacacacactccagctcCACAGACTAATGGTGCTTTCAAGAGAACTGggaaggtcaaatcatgacgtcagtgaccTTCAGATCGGAAAGTCAGAGCTTTAAGATGATCCCAGAGTTTCCGACTTTCGAATTCCGAGttagatgaccgttcaaaactatttttccccAGTCGGAGGTCGCTCCGCCCcgatttcccagttgtcttgaacacacgTCTTGAAGTCAGAGGtaggagatttccgagttcccagttgtcttgaaagcggCATCAGAGAAAGGGTTACAGAGAGACTAGATGACATCACATGAACATGACACAGCATGGttgagacatacagacagacatggtTCAGACCAATGACGTgaataaaccctggattgctgatgctatcaATTAGCCAATAAAATTTACAAAAtcacatgtatttaagtatttctttgttgtagtggggacagtaacattggTACTCTCTAAAGTACTTACTGTAAGGAATATGTTTTTATCAaacctttttttgtatttttagttCACATAATTAACATATATTATAATATACCAGTAAAAAACGTGTAGACATTGAAACATTTATTTCTATAGCTTCCCACCCAAAATGGCTTCAATACAGCGCCCCACTGTCAGTCATCCAGGGTTTATACATTATTAGTTCAGTCAGACAGGGCTTGAAACGGAATCATAATAACAATATGAAACTGACCTCAGTCCAAAATAAACCAGCTGAATCATGAAAAATCTTCTCAATTTTTCCCTTTTTCTGAAAAGCTTATTTTGAAACAGACCAGCTTGAGTTGCCCACCACCACTGATCACTAGCAAAGCTCAATTTTCTGCCCGTGTGGACAGATTACTATGGCATGTTTAGTTCAGTCTGTGTCTAGTTGAAAAGCTTCTGTGTTAGAGAGTGTTAGTGTCACACCTGTAAACACCAATCCTCCACCTCCACGCCTGGGGCCTGTAGGAGGAGTTGGTCTTAAAAGGGGGGCATTCCCAAACCTTAAAGGGGTGTGTCTGAACTGAACCAGACCTCAGCTGCAGCGCCGGACGTGCTCCAGGACGTACTCAGGGAAGTGCAGAGTGCAGACCTGCAGCCCATCCAGTTTGCAAGGCATCCTGGGATACTCGTCCTCCTTCCACTTGTTGTCATCGGGGTCAAAGGTCAGGATGGAGTCAGAGTAATGTCCGTTATAGCAGAGGCCCCCCAGTACCATGATCTGTCTGTCCAGCACCGCGACGCCATGCCCACTGCGCCCGATGGGCATCGACGCCAGGATGGTCCACTCGTCTGTCTCAGGGTCGTAAACCTCCGTGGACGGGCAGCCCTGCGACTCGAATGACGCCCGgaggatcacacacacacccccgaaCACGTACAGCTTCCCGTTATGGGAGATCATCTTGTGGAAGCAGCGAGCGTAATTCATCTTCGACTTGTTCTCCcagcagctggtgtgtgtgttggggaggaggggggtgcgGGCTGAACGCGTCCTGTGTGTGTCCGTTGTTCCCGCAGAGCCTGCTACACACAACCCTCCCCCTGCATCCAGTCCAGGGtcgaacacacacacccctttggaGGTGGATGAGGAGGTGATTCCTCCGGTGATATAGAGTTTACCGTTTAGGACCGTGCCCTCGTGACCGTACTTGTTGACCGGGTACGGATCCACAAACTCCCAGCGGTCCGCCGTGATGTCATAGCGTTCCGTGGAGTAAAATGTCTCATCCCGCGTCCGCCCAGCCACCGCGTAGATGAACTTACCGATGACCCCCACTGCAAACTCTGACC

Function

symbol description
klhl15 Predicted to act upstream of or within protein ubiquitination. Predicted to be located in nucleus. Predicted to be part of Cul3-RING ubiquitin ligase complex. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 103. Orthologous to human KLHL15 (kelch like family member 15).

NR:

description
kelch-like protein 15, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1440313 False 3355 lncRNA 0.45 2 14274376 14277808
TU1440314 True 3355 lncRNA 0.45 2 14274376 14277808

Neighbor

gene id symbol gene type direction distance location
sat1 LOC106590486 coding upstream 20322 14251426 ~ 14254054 (+)
LOC110489635 LOC106590481 coding upstream 56939 14186442 ~ 14217437 (+)
LOC110489629 LOC106590463 coding upstream 216945 14053026 ~ 14057431 (+)
LOC110490921 LOC106590500 coding upstream 274612 13988356 ~ 13999764 (+)
LOC118938945 NA coding upstream 313825 13959042 ~ 13960551 (+)
LOC110489641 LOC106590489 coding downstream 21619 14299427 ~ 14311302 (+)
apodb apod coding downstream 74010 14351818 ~ 14356250 (+)
LOC110489644 NA coding downstream 82240 14360048 ~ 14362944 (+)
LOC110489645 LOC106590496 coding downstream 90354 14368162 ~ 14374980 (+)
si:ch211-161h7.8 kat coding downstream 276027 14553835 ~ 14563740 (+)
G1260497 LOC106579465 non-coding upstream 165930 14107581 ~ 14108446 (+)
G1260117 LOC106590479 non-coding upstream 208641 14065022 ~ 14065735 (+)
G1259884 NA non-coding upstream 257955 14014054 ~ 14016421 (+)
G1259894 LOC106590504 non-coding upstream 269777 14004001 ~ 14004599 (+)
G1260021 NA non-coding upstream 357664 13915674 ~ 13916712 (+)
G1260629 NA non-coding downstream 85464 14363272 ~ 14364161 (+)
G1260649 NA non-coding downstream 100781 14378589 ~ 14381681 (+)
G1260638 NA non-coding downstream 135029 14412837 ~ 14422434 (+)
G1260631 NA non-coding downstream 167343 14445151 ~ 14451109 (+)
G1260637 NA non-coding downstream 181976 14459784 ~ 14460556 (+)
G1260074 NA other upstream 312560 13961501 ~ 13961816 (+)
G1260013 NA other upstream 404146 13869315 ~ 13870230 (+)
LOC110490824 LOC106590516 other upstream 516174 13746336 ~ 13758266 (+)
armc3 armc3 other upstream 793505 13459209 ~ 13480871 (+)
G1260745 NA other downstream 388851 14666659 ~ 14668539 (+)
LOC110489673 LOC106590441 other downstream 627612 14905377 ~ 14914892 (+)
G1260946 LOC106590444 other downstream 743184 15020992 ~ 15022053 (+)
LOC110489660 pan3 other downstream 915204 15166247 ~ 15194945 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location