G1260649


Basic Information

Item Value
gene id G1260649
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14378589 ~ 14381681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1440385
gtgtgaggatggggagggagagtgtgaggatggggagggagggagagtgagaggatagggagagaggtggaggatagggagagaggtggggatagggagagaggtggaggatagggACATAGGTACAGGAGGTACGTGGTACGTGGAGGTACGTGGAGGTAGGGACAGAggtggagatagggagagaggtgtagatagggagagaggtggagatagggagagaggtggaggatagggagagaggtggagatagggacagaggtggagatagggacagaggtggaggatagggagagaggtggagatagggagagaggtggagatagggacagaggtagagatagggacagaggtggaggatagggagagaggcggagatagggagagaggtggagatagggagagaggtggagatagggagagaggtggaggatagggagagaggtggagatagggacagaggtggagatagggacagaggtggaggatagggagagaggtggagatagggagagaggtggagataggga
>TU1440386
gtgtgaggatggggagggagagtgtgaggatggggagggagggagagtgagaggatagggagagaggtggaggatagggagagaggtggggatagggagagaggtggaggatagggACATAGGTACAGGAGGTACGTGGTACGTGGAGGTACGTGGAGGTAGGGACAGAggtggagatagggagagaggtgtagatagggagagaggtggagatagggagagaggtggaggatagggagagaggtggagatagggacagaggtggagatagggacagaggtggaggatagggagagaggtggagatagggagagaggtggagatagggacagaggtagagatagggacagaggtggaggatagggagagaggcggagatagggagagaggtggagatagggagagaggtggagatagggagagaggtggaggatagggagagaggtggagatagggacagaggtggagatagggacagaggtggaggatagggagagaggtggagatagggagagaggtggagataggga
>TU1440392
gtgtgaggatggggagggagagtgtgaggatggggagggagggagagtgagaggatagggagagaggtggaggatagggagagaggtggggatagggagagaggtggaggatagggACATAGGTACAGGAGGTACGTGGTACGTGGAGGTACGTGGAGGTAGGGACAGAggtggagatagggagagaggtgtagatagggagagaggtggagatagggagagaggtggaggatagggagagaggtggagatagggacagaggtggagatagggacagaggtggaggatagggagagaggtggagatagggagagaggtggagatagggacagagg
>TU1440393
gtgtgaggatggggagggagagtgtgaggatggggagggagggagagtgagaggatagggagagaggtggaggatagggagagaggtggggatagggagagaggtggaggatagggACATAGGTACAGGAGGTACGTGGTACGTGGAGGTACGTGGAGGTAGGGACAGAggtggagatagggagagaggtgtagatagggagagaggtggagatagggagagaggtggaggatagggagagaggtggagatagggacagaggtggagatagggacagaggtggaggatagggagagaggtggagatagggagagagggagagtgtgaggatagggagggagagtgtgaggatggggagggagagagggagagtgtgaggatagggagggagagtgtgaggatggggagggagggagagtgtgcggatggggaggaagggatagtgtgaggatggggagggagagtgtgaggatggggagggagggagagtgagaggatagggagagaggtggaggatagggagagaggtggggatagggagagaggtggaggatagggACATAGGTACAGGAGGTACGTGGTACGTGGAGGTACGTGGAGGTAGGGACAGAggtggagatagggagagaggtgtagatagggagagaggtggagatagggagagaggtggaggatagggagagaggtggagatagggacagaggtggagatagggacagaggtggaggatagggagagaggtggagatagggagagaggtggagatagggacagaggtagagatagggacagaggtggaggatagggagagaggcggagatagggagagaggtggagatagggagagaggtggagatagggagagaggtggaggatagggagagaggtggagatagggacagagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1440385 False 530 lncRNA 0.57 3 14378589 14381681
TU1440386 False 530 lncRNA 0.57 3 14378589 14381681
TU1440392 False 335 lncRNA 0.57 3 14378589 14381181
TU1440393 True 905 lncRNA 0.58 3 14378589 14380654

Neighbor

gene id symbol gene type direction distance location
LOC110489645 LOC106590496 coding upstream 3609 14368162 ~ 14374980 (+)
LOC110489644 NA coding upstream 15645 14360048 ~ 14362944 (+)
apodb apod coding upstream 22339 14351818 ~ 14356250 (+)
LOC110489641 LOC106590489 coding upstream 67287 14299427 ~ 14311302 (+)
sat1 LOC106590486 coding upstream 124535 14251426 ~ 14254054 (+)
si:ch211-161h7.8 kat coding downstream 172154 14553835 ~ 14563740 (+)
LOC110490825 LOC106590468 coding downstream 195761 14577442 ~ 14612644 (+)
LOC110489651 ccdc191 coding downstream 310576 14692257 ~ 14731090 (+)
LOC110489676 LOC106590472 coding downstream 399162 14780843 ~ 14796347 (+)
LOC110489674 LOC106590469 coding downstream 415167 14796848 ~ 14808166 (+)
G1260629 NA non-coding upstream 14428 14363272 ~ 14364161 (+)
G1260590 klhl15 non-coding upstream 100781 14274376 ~ 14277808 (+)
G1260497 LOC106579465 non-coding upstream 270143 14107581 ~ 14108446 (+)
G1260117 LOC106590479 non-coding upstream 312854 14065022 ~ 14065735 (+)
G1259884 NA non-coding upstream 362168 14014054 ~ 14016421 (+)
G1260638 NA non-coding downstream 31156 14412837 ~ 14422434 (+)
G1260631 NA non-coding downstream 63470 14445151 ~ 14451109 (+)
G1260637 NA non-coding downstream 78103 14459784 ~ 14460556 (+)
G1260698 NA non-coding downstream 142602 14524283 ~ 14525509 (+)
G1260703 NA non-coding downstream 157227 14538908 ~ 14587634 (+)
LOC110489635 LOC106590481 other upstream 162660 14186442 ~ 14217437 (+)
G1260074 NA other upstream 416773 13961501 ~ 13961816 (+)
G1260013 NA other upstream 508359 13869315 ~ 13870230 (+)
LOC110490824 LOC106590516 other upstream 620387 13746336 ~ 13758266 (+)
G1260745 NA other downstream 284978 14666659 ~ 14668539 (+)
LOC110489673 LOC106590441 other downstream 523739 14905377 ~ 14914892 (+)
G1260946 LOC106590444 other downstream 639311 15020992 ~ 15022053 (+)
LOC110489660 pan3 other downstream 811331 15166247 ~ 15194945 (+)
LOC110489686 LOC106590396 other downstream 1315244 15696896 ~ 15706601 (+)

Expression


Co-expression Network