G1260638


Basic Information

Item Value
gene id G1260638
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14412837 ~ 14422434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1440370
AGTTGATCCAAAAATCAGTTTATTACAAAATATCAGACGTGTTGTATTACAGATCTTCTGTCCTCCAGCCAATATTGCTACCATCAGTTTATAGCACTACCAGCTAgagccagcacacacacacacacacacacacacacacacacgcacacgcacgcacgcacacacacacacacacacacacatcttgcaGTATCTGTACCTCCCTGTGGATAGGTCTGTAATATGGTGTATGATTGCGTGTAATTATAAtcactattcacacacacacacacactctttcacatgcacacactcacacacacgagCATGCGTGTGCgttcacccacccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagcatcttcATGATTATCATTATTCTTATCCtcttctgtctgtcacacaccaTTAAACACTATACTGTTTACAGGACTTATCAACACATATATACTTGTATTCCATGTAATATTAACATCACAATAGTACattatctacaatacaacatcatCATGCTTTCCAATGACACGTTATATCTGTGCAGGACACTACATGTGGACTCAGTGTTGAAGTCATGAAAAGTGCTACAGGTACAGCAGAATGTGGTTTATATCCCTGATCCCAGCAGATCACCACCAGTACAATCAACAGCATTTACAGCaggtatttacacacacacacacacacacacacgcacacgcacacgcacacgcacacacacacacacacactaactctgAGAGCTGAAGTCATTTCAGCAACATAAATAATCCCTAGACATCCAAACAATAAATATTCAGACTTCATATTTGACCCTGTGAGCGACTGTATAATACTAACAATGATAttaatcaaatatatatatatatataactaaataATATAACTATATAATAACGTAACTACTGAGCATGCAGTTGTGTGCTTGTCCAGTGTTTCCCTTCGTAGGACTCAGCCATGTCTGTTCTATTGAGTATATTTCTATGGCCCGCCCAGTTCTCTAGTACACAGGTGGGCTGGTCTGTAGGTTTAGATCGGTGGTTAATGGTCTGTAATTATAGGAAAACGTCTGTAGTTTCCTGTCTGTAGGTTTAGGTCTGTAATTATAGGGAAATGACTGTAGTTTCCGGTCTGTAGGTTTAGGTCTGTGGTTAAAGGTCTGTAATTATAAGGAAATGTCTGTAGTTTCCTGTCTGTAGGTTTAGGTCTGTAGGGTTAAATGTCTGTAATTACAGGGACATGTCTGTAGTTTCCAGGTTGTAGGTTCGAGGTCTGTAATTATAAGGAAATGCCTGTAGTTTCTTGTCTGTAGGTTTAGGTCTGTAGGGTTAAATGTCTGTAATTACAGGGACATGTCTGTAGTTTCCAGGTTGTAGGTTCGAGGTCTGTAATTATAAGGAAATGCCTGTAGTTTCCTGTCTGTAGGTTTAGGTCTGTAGGGTTAAATGTCTGTAATTACAGGGAAATGTCTGTAGTTTCCGGTATGTAGGTTTAGGTCTGTGGTTAAAGGTCTGTAATTATAAGGAAATGTCTGTAGTTTCCTGTCTGTAGGTTTAGGTCTGTAGGGTTAAATGTCTGTAATTACAGGGACATGTCTGTAGTTTCCAGGTTGTAGGTTCGAGGTCTGTAATTATAAGGAAATGCCTGTAGTTTCCTGTCTGTAGGTTTAGGTCTGTAGGGTTAAATGTATGTAATTACAGGGAAATGTCTGTAGTTTCCTGTCTGCAGGGttaaatgtatgtatgtacagggTTAATGTATGCAGTTTCTGGTCTGTAGGTTTAGATCTGTGGGGTTATAGGTCAGTAGTCCTGGAGTCTGTCTCAGCCTACTTTCCCATAAGAGTCCAGAAGCAGGATGCTTGCCTGTTCTAGGTTCCACTGGCAACGCTCTAGAACCTCCTGGCACTCTGATCTAGAACGCAAACCCAGGCGAAACAACTGTTCAAcctataacagagagagagagagagagaaagagagagacagagagagagacagagagagagacagagagagagacagagagagagaaacagagagcgagagagagagagacagagacagagagagagagacagagagagatggagtgaggaagAAAGAGGAGTGAGGAATGGAGACGATAGAAAGAGATCATATTGTTTAGTACAGGATCAGGCAGTGAGAACAGCCACCTAGTCACTCACCATGCGAAGGGCACCTTGTGACTCTCCTCCATCACATATGTATCCTGGTGTGACGGCAGCGCCCTCATCAGGCCAAAGTCACCGATCTTCACCATTTCATTGGTTGACAGCAGGACGTTCCTTGCAGCCAGGTCTCTGTGGAGGAACCGCCTCTGTTCTAGATATGCCATGCCACAcgctacctacacacacacacacacacacacacacacacacacacacacacacacacacacagcagatgtgAACTAACTTGCTAGTGAGCGCTAGGTAATCAAGCAGTAACATCacataccacccccccccccccccc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1440370 True 2571 lncRNA 0.43 3 14412837 14422434

Neighbor

gene id symbol gene type direction distance location
LOC110489645 LOC106590496 coding upstream 37857 14368162 ~ 14374980 (+)
LOC110489644 NA coding upstream 49893 14360048 ~ 14362944 (+)
apodb apod coding upstream 56587 14351818 ~ 14356250 (+)
LOC110489641 LOC106590489 coding upstream 101535 14299427 ~ 14311302 (+)
sat1 LOC106590486 coding upstream 158783 14251426 ~ 14254054 (+)
si:ch211-161h7.8 kat coding downstream 131401 14553835 ~ 14563740 (+)
LOC110490825 LOC106590468 coding downstream 155008 14577442 ~ 14612644 (+)
LOC110489651 ccdc191 coding downstream 269823 14692257 ~ 14731090 (+)
LOC110489676 LOC106590472 coding downstream 358409 14780843 ~ 14796347 (+)
LOC110489674 LOC106590469 coding downstream 374414 14796848 ~ 14808166 (+)
G1260649 NA non-coding upstream 31156 14378589 ~ 14381681 (+)
G1260629 NA non-coding upstream 48676 14363272 ~ 14364161 (+)
G1260590 klhl15 non-coding upstream 135029 14274376 ~ 14277808 (+)
G1260497 LOC106579465 non-coding upstream 304391 14107581 ~ 14108446 (+)
G1260117 LOC106590479 non-coding upstream 347102 14065022 ~ 14065735 (+)
G1260631 NA non-coding downstream 22717 14445151 ~ 14451109 (+)
G1260637 NA non-coding downstream 37350 14459784 ~ 14460556 (+)
G1260698 NA non-coding downstream 101849 14524283 ~ 14525509 (+)
G1260703 NA non-coding downstream 116474 14538908 ~ 14587634 (+)
LOC110489635 LOC106590481 other upstream 196908 14186442 ~ 14217437 (+)
G1260074 NA other upstream 451021 13961501 ~ 13961816 (+)
G1260013 NA other upstream 542607 13869315 ~ 13870230 (+)
LOC110490824 LOC106590516 other upstream 654635 13746336 ~ 13758266 (+)
G1260745 NA other downstream 244225 14666659 ~ 14668539 (+)
LOC110489673 LOC106590441 other downstream 482986 14905377 ~ 14914892 (+)
G1260946 LOC106590444 other downstream 598558 15020992 ~ 15022053 (+)
LOC110489660 pan3 other downstream 770578 15166247 ~ 15194945 (+)
LOC110489686 LOC106590396 other downstream 1274491 15696896 ~ 15706601 (+)

Expression


Co-expression Network