XLOC_031785 (ssb)


Basic Information

Item Value
gene id XLOC_031785
gene name ssb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 3716666 ~ 3728694 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062266
TGTGTTTcctgtttttaacatttacaaGACTTTTGTTTTGTCAATATAATAACATCATATATACCATTCTCAGTTTTCATAAgtcttttattctatttttttttttttttattaaaaaaaaagtcctgaCCAAATGCATTAGTGGGCTACCACATTCAAATCTTTATATGATTTTCACTCACATTCACTCATTAATAAGCAATTGATgattcaaaacatacaaaatacttttaatttaGCATGTAGTTTAATAATAGCATACATTTTTGATCGAAATAGGATGAAACCGTTTGAAAAATTGTGGATGTCCTGATTCAACTACATTTCCCATAGTTCTCAACTCGGTCTAAATGATGTCATAACTCCACGACGGCATACCTCACTTCACGTTCACTCGGCGTTGAGTGTGGCGTTTCATCGCTATCAGACAAAAACAGAGCGCAAATAAATTTGTTGTGATTCTAGCAAAGATGGCTGACAATCAGGAAATGTCTCCCCTGGAGAAGAAGGTGGCGGAGCAGATTGAGTATTATTTTGGTGACCATAATCTCCCAAGAGACAAGTTTCTGAAGGAGCAGCTGCAGTTAGACGACGGATGGGTCCCTCTGGAGACCATGCTAAAATTTAATAGACTCAAAAGTCTCACGTCAGAGGAATCAGTCATTGTCGAGTCGCTGCTGAAGTCTAAAACAGGCCTGCTGGAGATCAGCGAAGACAAAACCAAAATAAGACGAGATCCGAACAAACCCCTTCCTGAGAACAACGAGGAATACAGGGACGCGCTCAAACACAAATCCATCTACATGAAAGGCTTTCCTCTTGAAACTACGCTGGATGATGTTAAAGAGTGGCTTGCTGATAAAGGCACATTTGAAAACATCTACCTGAGGAAAGGACCCCAGAAAACCTTCAAAGGATCAATCTTTGCTGTTTTGGAAACTGAAGAAGCTGCCAAGGCTTTTGTCGAGCGTGACGACATCAAAAATTTCAAAGGAAACGAGATGATCGTCATGATGAAAGATGCCtactttactaaaaagatagctGAGAGGAAGCAGAACCGTGTGGAATCTAAAGCTAAAGCCAAATGTGACAAAGAGGAAAAGCAGAAACAGGCTGAAGAAGAAGAGATGAAATCCCTGAATGAGCAGAGAGGCTGCCTGCTGAAGTTCTCTGGTGAATTGGGTCAGACCTCAAGGGAGGATTTTCACTCCGTCTTCTCTGATCACGCTCAAATCAAGTGGATTGATTTCACCAGAGGAGCTAAAGAGGGCACCATCCTGTTCCACTCCAACGCTAAAGAGGCTCTCCAGAAAGTCCGAGAGGCTCTCAACGGGGAGGATCCCAAGGTGAAGGAGCAGGCCGTTCAGTGGGAGATTCTGGAGGGAGACGTGGAGATGGAAACACTGAAGAAAATCATCGAGGATCAGCAGGAGTCAATAAACAAACGCAAAGGAGGCCGAGGAGGGTTCAGGGGTCGAGGAAGAGGACGAGGAGGCCGCAGAGACCGAGGAGGACGAGAACACACTCAGTTCAAGGGAAAGAAGACCAAGTTTGATAGCGATGAAGAGGGAGATGAAGAAAGCGCCAGTACAAAGAAGAGACCTCTCGAGTCTAACAGACAAGATAACGGAGAGCCGGTTTCCAAACAAGCCAAAAGCGAGAATGGTTCTTAATGGGGAAAGAGTTGTGGCCTTATTTTTTTGTACAGTAGATTTTCCCTGAAACCAACAGAAATGCATTCTCAGACTACTTGTGTGTCAAAGGCTAACCGCTGCACGAGAGCTCCACGCCACACTTTTCTCTAAAAAGGGCATCATGCATCATTCTTatggattttctttttgttttcaaacatgCCGGATGCCTGGATGCTTATTTATTTGCCATACACAAACACTTAGAGTTGCTGGTTTGATTTAAGATCTCCTCTACAGCTAGTAATGTGTCATTTTTAACAATCTATTCGGCTTAAACAGTCCGCTGGAAGCGCCTACAGAACTATTGACAACTGTAATCGAGTTATTTCATTCCTTGAGCACTCAGTTTGCAAACTCCTGTGTTTTCAGCACAATAAATGAGCTGAGTTATGATTTTGACAGCATTTGTGATACTGTATTACTGTAGATCTATTTGAACCCTTCAGAATAATGTATTGGGGTTGTCTGAATTGTCATTTCACTTTTTTCCATTAATGAAAAACTTTGTTTCTGCCGTCTAGATTATTCCATTGGTTGTCACTTGCACAAACAGAAGTGTGTGTTATAgctgtttctttttaaatgtggtTGCAAAGGAGTTTTCTTTGAGTAATTAGTGTTTtgactgaagatttttttttttaattgtacttaATCACAGCCACAGGAACGTGTCTCTTAATCTAGAGTGCTGTTTTAGGCGTCATGCTTCATATTTACCCCTGCAGGGCTTTGACAAGCACtcgttgttttgttttgctttgttttttactGCCATGTGTTGATGAATTAAACGCATTTAGTATTTCAATAAAGGTCTTGAAAATCCAAACGGTCATTATGGATGTGTTTTTTTACCTGTAGGAAATGTCTTAATGCAATACATTAACATTG
>TCONS_00062267
GTTTGTTGTGATTCTAGCAAAGATGGCTGACAATCAGGAAATGTCTCCCCTGGAGAAGAAGGTGGCGGAGCAGATTGAGTATTATTTTGGTGACCATAATCTCCCAAGAGACAAGTTTCTGAAGGAGCAGCTGCAGTTAGACGACGGATGGGTCCCTCTGGAGACCATGCTAAAATTTAATAGACTCAAAAGTCTCACGTCAGAGGAATCAGTCATTGTCGAGTCGCTGCTGAAGTCTAAAACAGGCCTGCTGGAGATCAGCGAAGACAAAACCAAAATAAGACGAGATCCGAACAAACCCCTTCCTGAGAACAACGAGGAATACAGGGACGCGCTCAAACACAAATCCATCTACATGAAAGGCTTTCCTCTTGAAACTACGCTGGATGATGTTAAAGAGTGGCTTGCTGATAAAGGCACATTTGAAAACATCTACCTGAGGAAAGGACCCCAGAAAACCTTCAAAGGATCAATCTTTGCTGTTTTGGAAACTGAAGAAGCTGCCAAGGCTTTTGTCGAGCGTGACGACATCAAAAATTTCAAAGGAAACGAGATGATCGTCATGATGAAAGATGCCtactttactaaaaagatagctGAGAGGAAGCAGAACCGTGTGGAATCTAAAGCTAAAGCCAAATGTGACAAAGAGGAAAAGCAGAAACAGGCTGAAGAAGAAGAGATGAAATCCCTGAATGAGCAGAGAGGCTGCCTGCTGAAGTTCTCTGGTGAATTGGGTCAGACCTCAAGGGAGGATTTTCACTCCGTCTTCTCTGATCACGCTCAAATCAAGTGGATTGATTTCACCAGAGGAGCTAAAGAGGGCACCATCCTGTTCCACTCCAACGCTAAAGAGGCTCTCCAGAAAGTCCGAGAGGCTCTCAACGGGGAGGATCCCAAGGTGAAGGAGCAGGCCGTTCAGTGGGAGATTCTGGAGGGAGACGTGGAGATGGAAACACTGAAGAAAATCATCGAGGATCAGCAGGAGTCAATAAACAAACGCAAAGGAGGCCGAGGAGGGTTCAGGGGTCGAGGAAGAGGACGAGGAGGCCGCAGAGACCGAGGAGGACGAGAACACACTCAGTTCAAGGGAAAGAAGACCAAGTTTGATAGCGATGAAGAGGGAGATGAAGAAAGCGCCAGTACAAAGAAGAGACCTCTCGAGTCTAACAGACAAGATAACGGAGAGCCGGTTTCCAAACAAGCCAAAAGCGAGAATGGTTCTTAATGGGGAAAGAGTTGTGGCCTTATTTTTTTGTAC

Function

symbol description
ssb Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Is expressed in several structures, including digestive system; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human SSB (small RNA binding exonuclease protection factor La).

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03030 DNA replication
ko03430 Mismatch repair
ko03440 Homologous recombination
ko05322 Systemic lupus erythematosus
ko03032 DNA replication proteins
ko03400 DNA repair and recombination proteins
ko03029 Mitochondrial biogenesis
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-223 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Is expressed in several structures, including digestive system; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human SSB (small RNA binding exonuclease protection factor La).

Ensembl:

ensembl_id ENSDARG00000029252

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062266 False 2594 mRNA 0.41 12 3716666 3728694
TCONS_00062267 True 1261 mRNA 0.47 11 3717613 3727809

Neighbor

gene id symbol gene type direction distance location
XLOC_031784 phospho2 coding upstream 3569 3710865 ~ 3713097 (+)
XLOC_031783 ppig coding upstream 8280 3693441 ~ 3708386 (+)
XLOC_031782 klhl41b coding upstream 24386 3680651 ~ 3692280 (+)
XLOC_031781 col28a2b coding upstream 40869 3640381 ~ 3675797 (+)
XLOC_031780 NA coding upstream 135375 3575051 ~ 3581291 (+)
XLOC_031786 NA coding downstream 2149 3730843 ~ 3813374 (+)
XLOC_031787 NA coding downstream 87355 3816049 ~ 3826125 (+)
XLOC_031788 gad1b coding downstream 99057 3827751 ~ 3863452 (+)
XLOC_031789 gorasp2 coding downstream 135346 3864040 ~ 3875115 (+)
XLOC_031790 NA coding downstream 148978 3877672 ~ 3879215 (+)
XLOC_031776 NA non-coding upstream 293933 3419776 ~ 3422733 (+)
XLOC_031773 BX255959.1 non-coding upstream 550944 3165608 ~ 3165722 (+)
XLOC_031771 NA non-coding upstream 1096328 2617389 ~ 2620338 (+)
XLOC_031770 LO018168.1 non-coding upstream 1123166 2519973 ~ 2593500 (+)
XLOC_031792 CU914157.1 non-coding downstream 272623 4001317 ~ 4004456 (+)
XLOC_031798 NA non-coding downstream 789464 4518158 ~ 4520247 (+)
XLOC_031802 NA non-coding downstream 1469575 5198269 ~ 5399444 (+)

Expression


Co-expression Network