Gene
RNA
| Item | Value |
|---|---|
| gene id | G1260912 |
| gene name | LOC106590443 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 14944679 ~ 14953423 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| phospholipid-transporting ATPase IB isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1440703 | False | 303 | lncRNA | 0.50 | 3 | 14944679 | 14953423 |
| TU1440704 | True | 224 | lncRNA | 0.51 | 2 | 14953117 | 14953423 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110489673 | LOC106590441 | coding | upstream | 29787 | 14905377 ~ 14914892 (+) |
| LOC110489674 | LOC106590469 | coding | upstream | 136513 | 14796848 ~ 14808166 (+) |
| LOC110489676 | LOC106590472 | coding | upstream | 148332 | 14780843 ~ 14796347 (+) |
| LOC110489651 | ccdc191 | coding | upstream | 213589 | 14692257 ~ 14731090 (+) |
| LOC110490825 | LOC106590468 | coding | upstream | 332035 | 14577442 ~ 14612644 (+) |
| LOC110489671 | LOC100195752 | coding | downstream | 71394 | 15024817 ~ 15049542 (+) |
| LOC110489669 | LOC106590445 | coding | downstream | 96862 | 15050285 ~ 15075129 (+) |
| rl21 | rpl21 | coding | downstream | 142842 | 15096265 ~ 15098694 (+) |
| gtf3ab | LOC106590449 | coding | downstream | 152594 | 15106017 ~ 15108849 (+) |
| LOC110489665 | NA | coding | downstream | 183900 | 15137323 ~ 15140777 (+) |
| G1260903 | NA | non-coding | upstream | 12065 | 14932351 ~ 14932614 (+) |
| G1260898 | NA | non-coding | upstream | 22778 | 14920642 ~ 14921901 (+) |
| G1260895 | NA | non-coding | upstream | 34735 | 14909147 ~ 14909944 (+) |
| G1260843 | NA | non-coding | upstream | 128855 | 14815492 ~ 14815824 (+) |
| G1260842 | LOC106590470 | non-coding | upstream | 129254 | 14815168 ~ 14815425 (+) |
| G1260973 | NA | non-coding | downstream | 120389 | 15073812 ~ 15074521 (+) |
| G1260954 | NA | non-coding | downstream | 126459 | 15079882 ~ 15080191 (+) |
| G1260978 | NA | non-coding | downstream | 150406 | 15103829 ~ 15104054 (+) |
| G1260998 | NA | non-coding | downstream | 187929 | 15141352 ~ 15141897 (+) |
| G1260745 | NA | other | upstream | 276140 | 14666659 ~ 14668539 (+) |
| LOC110489644 | NA | other | upstream | 581739 | 14360048 ~ 14362944 (+) |
| LOC110489635 | LOC106590481 | other | upstream | 728750 | 14186442 ~ 14217437 (+) |
| G1260074 | NA | other | upstream | 982863 | 13961501 ~ 13961816 (+) |
| G1260946 | LOC106590444 | other | downstream | 67569 | 15020992 ~ 15022053 (+) |
| LOC110489660 | pan3 | other | downstream | 239589 | 15166247 ~ 15194945 (+) |
| LOC110489686 | LOC106590396 | other | downstream | 743502 | 15696896 ~ 15706601 (+) |
| G1261980 | NA | other | downstream | 782507 | 15735930 ~ 15736417 (+) |
| mcmdc2 | mcmdc2 | other | downstream | 939545 | 15885437 ~ 15895996 (+) |
