G1260954


Basic Information

Item Value
gene id G1260954
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15079882 ~ 15080191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1440750
tcccagaaccacacggggggacctagtgaatgacctgcagagagctgggaccaacgtaacaaagcctaccatcagtaacacactacgccgccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgattcagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaacttgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccata

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1440750 True 310 lncRNA 0.47 1 15079882 15080191

Neighbor

gene id symbol gene type direction distance location
LOC110489669 LOC106590445 coding upstream 4753 15050285 ~ 15075129 (+)
LOC110489671 LOC100195752 coding upstream 30340 15024817 ~ 15049542 (+)
LOC110489673 LOC106590441 coding upstream 164990 14905377 ~ 14914892 (+)
LOC110489674 LOC106590469 coding upstream 271716 14796848 ~ 14808166 (+)
LOC110489676 LOC106590472 coding upstream 283535 14780843 ~ 14796347 (+)
rl21 rpl21 coding downstream 16074 15096265 ~ 15098694 (+)
gtf3ab LOC106590449 coding downstream 25826 15106017 ~ 15108849 (+)
LOC110489665 NA coding downstream 57132 15137323 ~ 15140777 (+)
LOC110489664 LOC106590452 coding downstream 62794 15142902 ~ 15147834 (+)
LOC110489660 pan3 coding downstream 86056 15166247 ~ 15194945 (+)
G1260973 NA non-coding upstream 5361 15073812 ~ 15074521 (+)
G1260909 NA non-coding upstream 116170 14941269 ~ 14963712 (+)
G1260912 LOC106590443 non-coding upstream 126459 14944679 ~ 14953423 (+)
G1260903 NA non-coding upstream 147268 14932351 ~ 14932614 (+)
G1260898 NA non-coding upstream 157981 14920642 ~ 14921901 (+)
G1260978 NA non-coding downstream 23638 15103829 ~ 15104054 (+)
G1260998 NA non-coding downstream 61161 15141352 ~ 15141897 (+)
G1261007 LOC106590453 non-coding downstream 74619 15154810 ~ 15155232 (+)
G1260946 LOC106590444 other upstream 57829 15020992 ~ 15022053 (+)
G1260745 NA other upstream 411343 14666659 ~ 14668539 (+)
LOC110489644 NA other upstream 716942 14360048 ~ 14362944 (+)
LOC110489635 LOC106590481 other upstream 863953 14186442 ~ 14217437 (+)
LOC110489686 LOC106590396 other downstream 616734 15696896 ~ 15706601 (+)
G1261980 NA other downstream 655739 15735930 ~ 15736417 (+)
mcmdc2 mcmdc2 other downstream 812777 15885437 ~ 15895996 (+)
LOC110489737 LOC106590377 other downstream 3779920 18859697 ~ 18866106 (+)

Expression


Co-expression Network