Gene
RNA
| Item | Value |
|---|---|
| gene id | G1261529 |
| gene name | rpl21 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 15096280 ~ 15098716 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rpl21 | Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in hypotrichosis 12. Orthologous to human RPL21 (ribosomal protein L21). |
| description |
|---|
| 60S ribosomal protein L21 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1441454 | False | 596 | lncRNA | 0.46 | 3 | 15096280 | 15097832 |
| TU1441451 | False | 364 | lncRNA | 0.51 | 2 | 15098040 | 15098716 |
| TU1441452 | True | 365 | TUCP | 0.51 | 2 | 15098040 | 15098716 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110489668 | LOC106590448 | coding | downstream | 244 | 15091761 ~ 15096036 (-) |
| LOC110489670 | LOC106590446 | coding | downstream | 8071 | 15080785 ~ 15088209 (-) |
| LOC110490926 | LOC106590444 | coding | downstream | 71904 | 14937736 ~ 15024376 (-) |
| LOC110490927 | LOC106590443 | coding | downstream | 78391 | 14920400 ~ 15017889 (-) |
| LOC110489675 | LOC106590470 | coding | downstream | 237939 | 14808367 ~ 14858341 (-) |
| LOC110489663 | LOC106590447 | coding | upstream | 10138 | 15108854 ~ 15137066 (-) |
| flt3 | LOC106590453 | coding | upstream | 52285 | 15151001 ~ 15161411 (-) |
| LOC110489662 | LOC106579544 | coding | upstream | 96524 | 15195240 ~ 15270906 (-) |
| LOC110489659 | LOC106590434 | coding | upstream | 185655 | 15284371 ~ 15319070 (-) |
| c1qtnf9 | LOC106590436 | coding | upstream | 220810 | 15319526 ~ 15322520 (-) |
| G1261569 | NA | non-coding | downstream | 5270 | 15090789 ~ 15091010 (-) |
| G1261562 | NA | non-coding | downstream | 15535 | 15077710 ~ 15080745 (-) |
| G1261533 | NA | non-coding | downstream | 53654 | 15041316 ~ 15042626 (-) |
| G1261527 | NA | non-coding | downstream | 61957 | 15033781 ~ 15034323 (-) |
| G1261583 | NA | non-coding | upstream | 63830 | 15162546 ~ 15162748 (-) |
| G1261601 | NA | non-coding | upstream | 90365 | 15189081 ~ 15189451 (-) |
| G1261603 | NA | non-coding | upstream | 91179 | 15189895 ~ 15190370 (-) |
| G1261604 | NA | non-coding | upstream | 91754 | 15190470 ~ 15190707 (-) |
| G1261605 | NA | non-coding | upstream | 100386 | 15199102 ~ 15224156 (-) |
| qtrt2 | qtrt2 | other | downstream | 414388 | 14666658 ~ 14692839 (-) |
| LOC110489648 | sh3k1 | other | downstream | 550804 | 14508427 ~ 14545697 (-) |
| G1261237 | LOC106596271 | other | downstream | 618053 | 14459807 ~ 14478227 (-) |
| LOC110489646 | LOC105021982 | other | downstream | 660694 | 14412828 ~ 14435607 (-) |
| G1261602 | NA | other | upstream | 90830 | 15189546 ~ 15189816 (-) |
| G1261796 | NA | other | upstream | 406982 | 15505698 ~ 15506198 (-) |
| G1262503 | NA | other | upstream | 707534 | 15806250 ~ 15807617 (-) |
| LOC110489690 | LOC106590399 | other | upstream | 729635 | 15821701 ~ 15845199 (-) |
| LOC110490929 | LOC106590401 | other | upstream | 890570 | 15938237 ~ 16035283 (-) |
