XLOC_031787


Basic Information

Item Value
gene id XLOC_031787
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 3816049 ~ 3826125 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062270
gcgctacccactacaTACACTACAGCCCCTACATACAATATAACATAACAAACAGGTGTCAGACTCATTGGCGATTAAACGTGATTTTTTCACAAACGTTAATGAAGCACTTCATAAAGCAATTTTGGACGTCGTCAAGTTAAACATTGGTTCCGGAAGACACACGTTTGCCCTCGGATTATTTGAGGGTGACGCCTGTAGTTATGGAAACAGCACGCTTGTCCTGCAACCTTCCAGTGCTCTCTCAAACTACAACAGCGCTTCAGAAAGTCGAACGAAACTTCAGAAATGTGCTAGTGTAGGCACTATTTAATAAAAGTACCCTTTCGTCTTCTAAATACAgacgatatatatatatgagaataAAGTTAGACACATCGCACAGATGAACAGGTTACAGTGTGTCGGAAGACCCTCAGAAGTCTCATCAAAGCTCAGTGAAAAGGAAGTTCCACCCTTGAAGCTTTTGAGTGCCAGCTTGGGAGacccaGCAGCAAAAGAAGCAGTGGAACGGAAAGCAAAGCAAACAAaactcaaaataaatgaaaagacagAAGGACAGGCTCCTGCTCAAACCTCTGAGACAGCATCAAATATGAAACTTAGCTCTTCCACAAGgCAGCAGAAACCAAAACCTGAGGGAAAGACAGATGGGATGGATTCTTccttaacaacaaaacaaaatgctttcCAGAAGTCAGAAACATTAAATCCTAGTCTCAAAGCACACAGTTCTAACAGCAGCAGAGGGTATAATGCCTCTAAAGCTCCGTCCTTCAGAAATGTAACCACGCATGGACATAAACCACCCAAACAGGTTCCCTCGATTATGACAGcaCTGGAAAAGCAAGAAGAATGTGAAGTTCAGTCAGAAAGTGTGCATGAACTGCACACTCAGGCCCCTGGAGAAGTGCTGTCCGCAAATGACAAGGAATCTCCTGAGGCACAACATGATGAGGAGGAAAATGAGAGCGATGAAGGACTTGTACCGCTAGAACTCTTTGCAGAGTTTCTACAGGCTGTGATGATAAAGAATTACCAACTTGCAAAGAAGCTTTGTCAGATGAttttaatttatgAGCCCCAGAACTCAGAAGCCAAATGGTTCCTTCCACTCATTGAAGAAAAACTGCTGATGGAAGCGGATGAAGAAtcggatgatgatgatgatgaatctGACACAtctgatgataatgatgatgaagatgatgatgatgatgatgatgagtcaTCAGAGAGCTCTGACACAGATGAAGAGTCCATTGACAGCACAGATGATACATTATCATCTTCATGCTAAATTAGCATCTGGTGGAGTGAATGTCCTGCATCACAAACATTATTGCTTATATGTCTTGTGCTCATAAACAATGCGTGATCTGTTCAGCATCTCATGTATGCAGTTTTCTCAATTGCTGACTGCACATATTCTGTGTGAATTGTGTATTGTGAATAAAATACCCATTTCAAGCTTaattttttcggtttatttgttgtaaaaatgcaACATAGCGCCATCTAACGGAAGAACTATATCATTTCCTAAATTTACCGCTCACACTAAAAGTTGTCCAAAAAGGCTCAATAACCATTATTTTGAGACCAattgcactctaaaaaaaaatctgacttgtCGTAACCCAAAGctaggtcaaatatggacaaacctaa

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048747 muscle fiber development biological_process
GO:0021546 rhombomere development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006413 translational initiation biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062270 True 1671 lncRNA 0.41 11 3816049 3826125

Neighbor

gene id symbol gene type direction distance location
XLOC_031786 NA coding upstream 2675 3730843 ~ 3813374 (+)
XLOC_031785 ssb coding upstream 87355 3716666 ~ 3728694 (+)
XLOC_031784 phospho2 coding upstream 102952 3710865 ~ 3713097 (+)
XLOC_031783 ppig coding upstream 107663 3693441 ~ 3708386 (+)
XLOC_031782 klhl41b coding upstream 123769 3680651 ~ 3692280 (+)
XLOC_031788 gad1b coding downstream 1626 3827751 ~ 3863452 (+)
XLOC_031789 gorasp2 coding downstream 37915 3864040 ~ 3875115 (+)
XLOC_031790 NA coding downstream 51547 3877672 ~ 3879215 (+)
XLOC_031791 dync1i2b coding downstream 108613 3934738 ~ 3956580 (+)
XLOC_031792 CU914157.1 coding downstream 175192 4001317 ~ 4004456 (+)
XLOC_031780 NA non-coding upstream 234758 3575051 ~ 3581291 (+)
XLOC_031776 NA non-coding upstream 393316 3419776 ~ 3422733 (+)
XLOC_031773 BX255959.1 non-coding upstream 650327 3165608 ~ 3165722 (+)
XLOC_031771 NA non-coding upstream 1195711 2617389 ~ 2620338 (+)
XLOC_031770 LO018168.1 non-coding upstream 1222549 2519973 ~ 2593500 (+)
XLOC_031798 NA non-coding downstream 692033 4518158 ~ 4520247 (+)
XLOC_031802 NA non-coding downstream 1372144 5198269 ~ 5399444 (+)
XLOC_031803 CU074421.2 non-coding downstream 1858056 5684181 ~ 5684295 (+)

Expression


Co-expression Network