G1261615


Basic Information

Item Value
gene id G1261615
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15241405 ~ 15245728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1441552
ggctatCAGCTAGTTAACACTGGGGGTTAGGGAACTATCAGCTAATTAACACTGGGGGTGGGGGGTCCACCTGTTCCCTGAGAAAGGGCAGGATGCTTCCACTGGGTAACAGTAATTTCCTCAAGTCTGCCTCCTCCAAGAAAACAACCATGTTACACAATACTCTATCTCCACAGTAACACAATACTCTGTCTCCAaagtaacacaagactctgtctctattgtaactccagactctgtctccacagtaacacaatactctgtctccaaagtaacacaagactctgtctccacagtaacacaagaatctgtctctattgtaacttCAGACTCTTTCTATATTGTAACTCCAgactgtctctacagtaacacaatactctgtctccacagtaacacaatactctgtctctattgtaactccagactctgtctctattgtaactcCAGACTCTGTCTCCACACTAACACAAGACCttgtctctacagtaacacagaactctgtctccacagtaacacaagactctgtctccacagtaacacaatactctgtctccacagtaacacaagactctgtctctattgtaactccagactctgtctccacagtaacacaatactctgtctccacagtaacacaagactctgtctccacagtaacacaagactctgtctctacagtaacacaagactctgtctctacagtaacacaatactctgtctccacagtaacacaagactctgtctctattgtaactccagactctgtctccacagtaacacaatactctgtctccacagtaacacaagactctgtctctattgtaactccagactctgtctctacagtaacacaagactctgtctctacagtaacacaatactctgtctccacagtaacacaagactctgtctctattgtaactccagactctgtctctacagtaacacaagactctgtctctattgtaactccagactctgtctctacagtaacacaagactctgtctctattgtaactccagactctgtctctacagtaacacaatactctgtctctacagtaacacaagactctgtctctattgtaactccagactctgtctccacagtaacaccagactctgtctctattgtaacacaagactctgtctctattgtaactcCAGATTCTGTCtccacagtaacacaagactctgtctctattgtaacacaagactctgtctctattgtaactcaatactctgtctctattgtaacacaagactctgtctctattgtaactcCAGATTCTGTCtccacagtaacacaagactctgtctctattgtaacacaagactctgtctctattgtaactcaagactctgtctctattgtaactcaagactctgtctccacagtaacacaatactctgtctctacagtaacacaatactctgtctctacagtaacacaagactctgtctccagagtattgtgttactgtagagactgtctccacagtaacacaagactctgtgaGTCTTGAGAGTCTTgagttacaatagagacagagtcttgagttacaatagagacagagtcttgagttacaatagagacagagtcttgtgttactgtggagacagagtcttgtgttactgtggagacagagtcttgtgttactgtggaGACAGAGTCTGGAGTTACActagagacagagtcttgtgttacaatagagacagagtcttgtgttactgtggagacagagtcttgtgttactgtggaGACAGAGTCTGGAGTTACActagagacagagtcttgtgttactgtagagtaacacaagactctgtctctattgtaacttCAGACTCTGTCTCCACAggaacacaagactctgtctccacagtaacacaatactctgtctctacagtaacacaatactctgtctctacagtaacacaagactctgtctccagagtattgtgttactgtagagactgtctccacagtaacacaagactctgtgaGTCTTGAGAGTCTTgagttacaatagagacagagtcttgagttacaatagagacagagtcttgagttacaatagagacagagtcttgtgttactgtggagacagagtcttgtgttactgtggagacagagtcttgtgttactgtggagacagagtcttgtgttactgtggaGACAGAGTCTGGAGTTACActagagacagagtcttgtgttacaatagagacagagtcttgtgttactgtggagacagagtcttgtgttactgtggaGACAGAGTCTGGAGTTACActagagacagagtcttgtgttactgtagagtaacacaagactctgtctctattgtaacttCAGACTCTGTCTCCACAggaacacaagactctgtctccacagtaacacaagactctgtctctacagtaacacaatactctgtctccacagtaacacaagactctgtctctattgtaactccagactctgtctccacagtaacacaagactctgtctccacagtaacacaagactctgtctccacagtaacacaagactctgtctctacagtaacacaatactctgtctctacagtaacacaagactctgtctctattgtaactccagactctgtctccacagtaacaccagactctgtctctattgtaacacaagactctgtctctattgtaactcCAGActctgtctccacagtaacacaagactctgtctctattgtaactcCAGACTCTGTCTCCACAGACATAATCCACATCAGCAGGGTGAAATGTCTGTACATTTACGTAATGtcagtgtctgttgttgagagcGTATTGTGAGGTTGTCAAGTTACTTTGTTTAATTTTATTGCAGCAATAATGTTCATCCTACGTTTACCACTGTGGCCTCATGTTAGTCCTTATC

Function

NR:

description
lethal(3)malignant brain tumor-like protein 4 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1441552 True 2914 lncRNA 0.42 3 15241405 15245728

Neighbor

gene id symbol gene type direction distance location
flt3 LOC106590453 coding downstream 79994 15151001 ~ 15161411 (-)
LOC110489663 LOC106590447 coding downstream 104339 15108854 ~ 15137066 (-)
LOC110489668 LOC106590448 coding downstream 145369 15091761 ~ 15096036 (-)
LOC110489670 LOC106590446 coding downstream 153196 15080785 ~ 15088209 (-)
LOC110490926 LOC106590444 coding downstream 217029 14937736 ~ 15024376 (-)
LOC110489659 LOC106590434 coding upstream 38643 15284371 ~ 15319070 (-)
c1qtnf9 LOC106590436 coding upstream 73798 15319526 ~ 15322520 (-)
LOC110489657 LOC106590437 coding upstream 81441 15327169 ~ 15330900 (-)
LOC110489656 abhd10 coding upstream 90219 15334691 ~ 15521397 (-)
LOC110489683 LOC106590393 coding upstream 426309 15672037 ~ 15696647 (-)
G1261605 NA non-coding downstream 17249 15199102 ~ 15224156 (-)
G1261604 NA non-coding downstream 50698 15190470 ~ 15190707 (-)
G1261603 NA non-coding downstream 51035 15189895 ~ 15190370 (-)
G1261601 NA non-coding downstream 51954 15189081 ~ 15189451 (-)
G1261583 NA non-coding downstream 78657 15162546 ~ 15162748 (-)
G1261628 NA non-coding upstream 28761 15274489 ~ 15274807 (-)
G1261629 NA non-coding upstream 29767 15275495 ~ 15275801 (-)
G1261657 NA non-coding upstream 88087 15333815 ~ 15348445 (-)
G1261672 NA non-coding upstream 117747 15363475 ~ 15365157 (-)
G1261602 NA other downstream 51589 15189546 ~ 15189816 (-)
G1261529 rpl21 other downstream 142689 15096280 ~ 15098716 (-)
G1261562 NA other downstream 162053 15077710 ~ 15080745 (-)
qtrt2 qtrt2 other downstream 559513 14666658 ~ 14692839 (-)
LOC110489648 sh3k1 other downstream 695929 14508427 ~ 14545697 (-)
G1261796 NA other upstream 259970 15505698 ~ 15506198 (-)
G1262503 NA other upstream 560522 15806250 ~ 15807617 (-)
LOC110489690 LOC106590399 other upstream 582623 15821701 ~ 15845199 (-)
LOC110490929 LOC106590401 other upstream 743558 15938237 ~ 16035283 (-)
G1262745 NA other upstream 1030281 16276009 ~ 16276552 (-)

Expression


Co-expression Network