XLOC_031792 (CU914157.1)


Basic Information

Item Value
gene id XLOC_031792
gene name CU914157.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 4001317 ~ 4004456 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062279
cccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgtcgatagaacgtttaatgtagaacggttgaaaaacagcctgcatatgacaaggctttaacgttgaaatgtggttgaaaatacgtcagtagttgctttaatgttgaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacattttttttatcatgatctgtatgttgaatttacgtcatggcttcacccaatattcaacatgtttggttaccatggaatcggaggactcggcgcacgcggccgcgcgcagcgcttcacttcacgtaattacgaacacctgacctgcagtgcagcagaattcagagagaTGTAACTTACTCCAGAGACGCACTAACTTGCACATCATTGAATAgaaaaggctttgtccatgtccagttgaggggcatcaagaacaagcagatggcctaaacctgtgtcagcctggacagactgcCGTTCTGCTACTCCACAccaaggcttttgtatggatgtctgactactactgtgttctctaaaggttttctggaagctccatttgagggcatcaaggacctactgatggcctaaaccagtgtcagcctagacagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacggtgttctctaaaggtataactggagcaaaacaacagcatccgttacagtgaaatttgtgttcataaaagatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacagaaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtGTGTGCTTACTGCTCGTAATAAACACACATGCTGATCTGATGCGGGAGAGATATAtgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcagtggaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtacttaataacagaacctatatgaacagttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccatgtgaacatgcaatttttatgatactaataataatggaataacaaattgcttttactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgttgcagtaatgctaaacacaatagatgtactttatgaaccccccccccccccccccgcccccaaaaaaa
>TCONS_00064799
taattacgaacacctgacctgcagtgcagcagaattcagaggtaagcgtgtttttagatgctttaatgttttatttaccacccgattttgttttacacacagtgtatcttaaatgtgacttggtgtagtgtttcgaattttgaagcatttaaaactttccagcTTGTTTTTAGTCTTGTTTGCACTCCGGTGACGCGCAGCTAACCTTgaggtaatgtcacatgtttaacgttagtctaaatgagcgtttttatgccaaattcaaagcgataaactccaaacgcagtttaaagttactgagcaacgttataaaacaatatcctTTTCATACGCTGtatcattagtgttattattacaaagtgaactgctgtcgtttcactgttgttgttgtttttgcttttagagaTGTAACTTACTCCAGAGACGCACTAACTTGCACATCATTGAATAgaaaaggctttgtccatgtaagtttactttacctttaactaagctatctgttaaatcttcttggtgctttggttggtgatattctctttctaatctgtttgtttattgattgttaggctatgttgtgatattatattgttatattgatattattattgtgaaatcatgttgtgatgttatactatgtgaccgtattggggaacaaatatatatttagttagaaattaatgcttaaattacactttgtatagtaGTAGATAAGAGGTGTAATGCGTTTTAATTTTCTGGgttttctggaaggtccagttgaggggcatcaagaacaagcagatggcctaaacctgtgtcagcctggacagactgcCGTTCTGCTACTCCACAccaaggcttttgtatggatgtctgactactactgtgttctctaaaggtattactggagcaaaacaacagcacccgttacagtgaaatttgtattcataaaaatagtgatacatgtgtagcaggtccagtacatgtgatgtcattgagaagttgtttttattaaatgtcattaaaacaaataaataaacatgctatttaaataaatctaaatattaaaaacttgaggattaagatgagaaatgaaatgcatcatctgtcttgcgaaaagggtctacttaagaattctggtgttttccaactgaaagggatagttcacccaagaatgaaaatttactcacattttactccccaaatggtttaaaaccattatgagtttattttgtttaacaaaaaaaaagaggctattctgaaaaaaaaaaaaaactaaaaacctgtaaacattgaccaccatagtagaaaaaaatactatagaagtcaatggttatagatttgcagctttcttcaaaatatcttcttttgtgttcaacgtggtcagtaaatgacaacagaatacaaattttgaactatccttttaattctctgtcctacatgcagacttttgcagaagtgctactccttctagagtttttctcaaccatatgtctaaaaagctttaaacagcttttacagtacatgtaatggtttacaacaacttgtaattattagatgtgttgaatgtttcatgattctttactgcagcctttgttaaaaaaaaaaaaagcaattttttcgagaatctgaaatttgaattctggaaatgctggcaccggtggtggcgaagggcttcctgacgacatcacacctaattcttcacttctcttagttaggaatattcagatggatgagtcaaaattattgagtgtggcgatattataggacaaatttggattcaataaaaaataaatatttgaatttcactttgtataatagctgataccaacttagttgtaacctcatatttcatttattgcaggttttctggaagctccatttgagggcatcaaggacctactgatggcctaaaccagtgtcagcctagacagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacggtgttctctaaaggtataactggagcaaaacaacagcatccgttacagtgaaatttgtgttcataaaagatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacagaaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtGTGTGCTTACTGCTCGTAATAAACACACATGCTGATCTGATGCGGGAGAGATATAtgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcagtggaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtacttaataacagaacctatatgaacagttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccatgtgaacatgcaatttttatgatactaataataatggaataacaaattgcttttactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgttgcagtaatgctaaacacaatagatgtactttatgaaccccccccccccccccccgcccccaaaaaaa

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096825

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062279 False 1529 lncRNA 0.40 4 4001317 4004456
TCONS_00064799 True 2767 lncRNA 0.35 1 4001690 4004456

Neighbor

gene id symbol gene type direction distance location
XLOC_031791 dync1i2b coding upstream 44737 3934738 ~ 3956580 (+)
XLOC_031790 NA coding upstream 122102 3877672 ~ 3879215 (+)
XLOC_031789 gorasp2 coding upstream 126202 3864040 ~ 3875115 (+)
XLOC_031788 gad1b coding upstream 137865 3827751 ~ 3863452 (+)
XLOC_031787 NA coding upstream 175192 3816049 ~ 3826125 (+)
XLOC_031793 sema5bb coding downstream 29376 4033832 ~ 4146073 (+)
XLOC_031794 trim25l coding downstream 156123 4160579 ~ 4176841 (+)
XLOC_031795 STRADB coding downstream 224904 4229360 ~ 4250154 (+)
XLOC_031796 nbeal1 coding downstream 250863 4255319 ~ 4365331 (+)
XLOC_031797 rbm26 coding downstream 366479 4370935 ~ 4403253 (+)
XLOC_031780 NA non-coding upstream 420026 3575051 ~ 3581291 (+)
XLOC_031776 NA non-coding upstream 578584 3419776 ~ 3422733 (+)
XLOC_031773 BX255959.1 non-coding upstream 835595 3165608 ~ 3165722 (+)
XLOC_031798 NA non-coding downstream 513702 4518158 ~ 4520247 (+)
XLOC_031802 NA non-coding downstream 1193813 5198269 ~ 5399444 (+)
XLOC_031803 CU074421.2 non-coding downstream 1679725 5684181 ~ 5684295 (+)
XLOC_031804 NA non-coding downstream 1934009 5938465 ~ 5981858 (+)
XLOC_031805 NA non-coding downstream 2080780 6085236 ~ 6086132 (+)

Expression


Co-expression Network