G1261941


Basic Information

Item Value
gene id G1261941
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15671900 ~ 15674666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1441940
taagcatttcaccttaaggtctacaccggttgtattcgacgcatgtgacaaaatttgatttgacaacacACGGCCGAcatcaccacacacactgctgacaTCACAACACACACTGCTGACATCACAACAGACGCAAACAATTGTAATTCTTTTTAATATTTGAATTGGGAATGAACTGTTTTGAGATCTGCAATATATTATATTACGTTATATGTCAGATAAACACTGTATATGAGAAGAAGCTACTATTCTGAGGACTTGATACACGATTCTGTCAGCCATCCTGATGCAGTGGCTATTAAAGGATAGGGTGGGATTAAAAACTGACTGCATATCACATGGGGGATTTAAACAGAGACAAAATAACGTGTTCAAGTATTTATGATAAACAGTACAAGGGGTATAACATATATATTACAATTAACTCCATGGTGCGAATCTTGACTGATTCTGTGGATGTGAGAGAAAAAAGGAAGACTAAGGATTGGGATTAAATATAACACTGAGGATTTCTCAACTTCATCCTATGACTTGTTGTTGTCGTGTTCGTTGTTGTTGGTAAGCACTACTTTTGAGGGCTGGTGCTAGATAAGAGACACTCACTTTAGTGGATATATGTTATTAGGCTAATTCTTTGAGGTCATTTTAAATCATACTATTCGACTAGCCATGTGAGCTGTGAGTATGGCCTCCAGCAGGAGACTATTCATTGTCTGGTCGGCACTTCCTTTACACAATGCATGTCAATCACACTCAAATCAGATGAGATCATGAAGGCAGGATTACAGGCATGAAAGGCTCTCAAAAGAAAATTAAGTCAATCCAAAACCAGTTCTCTGCAAGAACCTACATCATACTTTAAATGTATCGGAAATTAGTCAAAGCCTCTTGATAAAGGGTGTTATCTACATCCAAAAGTATATTCTGTGACATTTTTCAACAAAGTAAAATGCAGACGAAGTTGAACTGtaacagaaaaaaaaacatgatttctgAAATCAGGACAGAGATTAACATAGATTGGAGACCAGGAACCATTTACAAAATGTACCACCCCCCGATGCTGCTTACACCTCTACAGTCTTCCTCTCAGcagcaatggtgtgtgtgtgtactttgttTTAAGGACACAGCTGGCTAAAAGGGGGTAAAACAAACATTAAAGTGGCTGGGCCACAATAGTGAAGATGTTGATGAGCTTTAGGTTGAGAGACACATTTAGGGCGAGATACTTTACTCCACTACAATGATGATAATGCTATACAGAAACCGTGTAGAAGGGGAAAGGAACTAAGAAGTCAATTCAGGACGTCAGTCAATACATCACAACAACGATCTGTCTGAACAcacctctactgtactgttcaaCCAAGGGATTCCCAAGTCCTCGGAGACTAACAAGAGGTAACACGTGGACCAATGCAGATGGCTATAGTAGAACCGTAACCATCACAATGTCCCTTTTCCTTCTGCATCAACAGTCCTCTATGTGGAAGCTAGTGTCATTTGACTGACTGGACCGCAGCCTTCGCTGGGGTCTCGTTTCCTTACGACAGATATGACATCTCCCTGTGAGAGACATGACGTGCTGGGGCAAACAAGCTCCGGACGTAGAGGACCCGAGATTGCATTATTCACAAGGCTTCAGAGGTTTAGAGCAAAGTTCAAATGGACCACTAGATAGTAATACATTGCAGCAAAGCATGAAAAAGGCAACGAGCAAGATCAGCACACACAAAATAATTACAGCACGCTTTAAACAGGCTCCCCACATGAGGGAACCAAAAGTGAATGAGAGGTTGGCAAAAGACAGAAAAAGGTGAAAAAAgcctcttttttttaaatgaggaaAAGATGAGAACTCAAACTCAAGCACAAAAATAACCTATTTCCACAAGCACAGCATCATCCAATGCAATCGCTCCAACTCAGAAGACTACGCAATGCCATGCATTCCCACAATGCAATTTGGTTTCAAAGAGATGATGGACCGCCGGGCATCAGAGAAAGCTCATTTTCTAAAGGAAAAGAAGAGAAGCTGATTCTGAAGTCCTCCGTCGATGGCTTGTGAGGTGCATAATGTGTAACGGTTGAGTGTGTATTTAGTGTGCAGTGCTTTACCTGTGGTACAGTAGCTAGCATGTTCTTAGCTTATTTCCTCTTATATACAAGTGAAGGTTATtccaggaactttcaataaatgacctggttttccagaaatcctggtagGAGGTTACCAgctttcctgcttattccctcctgattccgggaATCCTCCAACCGGGATATCTGGAAAACCAGGGAGTTTATTGAATgttcctggaattttgcaaccctattcAGGGTGCGCATGGCAGTCCAGTGCTCCATATAGACACTGAGCAGAGTGGTACTCTGTGTGGCTGCTGAGAGGGACTAGAGAGTAGAAGGGCTGGATGACCGGGGAAGGGGATAGGCAAGGCTGGTGGGCTAAGGCGACCGACCGTCAGTTGGTAGTTTCGGGTTGTGACGATGGGTACTGACACAGGAAGTGGTCACCAGTAGAAGGAGCGGGACAGGAAGTTGGCGGCGGTGCTGAGCCAGCCCACGCCATCTGTGATGGAGCCCACACGGGTCACGGCCTTGTCCTGCTCCTGAGACGGGCTTTCCTCCTCAGGGAGGTAGTCTGGGACGTCCACGTTgtgctccaccaccaccacctccgcACCCTCCTGGAATGGAAGC
>TU1441936
ATTGGGAATGAACTGTTTTGAGATCTGCAATATATTATATTACGTTATATGTCAGATAAACACTGTATATGAGAAGAAGCTACTATTCTGAGGACTTGATACACGATTCTGTCAGCCATCCTGATGCAGTGGCTATTAAAGGATAGGGTGGGATTAAAAACTGACTGCATATCACATGGGGGATTTAAACAGAGACAAAATAACGTGTTCAAGTATTTATGATAAACAGTACAAGGGGTATAACATATATATTACAATTAACTCCATGGTGCGAATCTTGACTGATTCTGTGGATGTGAGAGAAAAAAGGAAGACTAAGGATTGGGATTAAATATAACACTGAGGATTTCTCAACTTCATCCTATGACTTGTTGTTGTCGTGTTCGTTGTTGTTGGTAAGCACTACTTTTGAGGGCTGGTGCTAGATAAGAGACACTCACTTTAGTGGATATATGTTATTAGGCTAATTCTTTGAGGTCATTTTAAATCATACTATTCGACTAGCCATGTGAGCTGTGAGTATGGCCTCCAGCAGGAGACTATTCATTGTCTGGTCGGCACTTCCTTTACACAATGCATGTCAATCACACTCAAATCAGATGAGATCATGAAGGCAGGATTACAGGCATGAAAGGCTCTCAAAAGAAAATTAAGTCAATCCAAAACCAGTTCTCTGCAAGAACCTACATCATACTTTAAATGTATCGGAAATTAGTCAAAGCCTCTTGATAAAGGGTGTTATCTACATCCAAAAGTATATTCTGTGACATTTTTCAACAAAGTAAAATGCAGACGAAGTTGAACTGtaacagaaaaaaaaacatgatttctgAAATCAGGACAGAGATTAACATAGATTGGAGACCAGGAACCATTTACAAAATGTACCACCCCCCGATGCTGCTTACACCTCTACAGTCTTCCTCTCAGcagcaatggtgtgtgtgtgtactttgttTTAAGGACACAGCTGGCTAAAAGGGGGTAAAACAAACATTAAAGTGGCTGGGCCACAATAGTGAAGATGTTGATGAGCTTTAGGTTGAGAGACACATTTAGGGCGAGATACTTTACTCCACTACAATGATGATAATGCTATACAGAAACCGTGTAGAAGGGGAAAGGAACTAAGAAGTCAATTCAGGACGTCAGTCAATACATCACAACAACGATCTGTCTGAACAcacctctactgtactgttcaaCCAAGGGATTCCCAAGTCCTCGGAGACTAACAAGAGGTAACACGTGGACCAATGCAGATGGCTATAGTAGAACCGTAACCATCACAATGTCCCTTTTCCTTCTGCATCAACAGTCCTCTATGTGGAAGCTAGTGTCATTTGACTGACTGGACCGCAGCCTTCGCTGGGGTCTCGTTTCCTTACGACAGATATGACATCTCCCTGTGAGAGACATGACGTGCTGGGGCAAACAAGCTCCGGACGTAGAGGACCCGAGATTGCATTATTCACAAGGCTTCAGAGGTTTAGAGCAAAGTTCAAATGGACCACTAGATAGTAATACATTGCAGCAAAGCATGAAAAAGGCAACGAGCAAGATCAGCACACACAAAATAATTACAGCACGCTTTAAACAGGCTCCCCACATGAGGGAACCAAAAGTGAATGAGAGGTTGGCAAAAGACAGAAAAAGGTGAAAAAAgcctcttttttttaaatgaggaaAAGATGAGAACTCAAACTCAAGCACAAAAATAACCTATTTCCACAAGCACAGCATCATCCAATGCAATCGCTCCAACTCAGAAGACTACGCAATGCCATGCATTCCCACAATGCAATTTGGTTTCAAAGAGATGATGGACCGCCGGGCATCAGAGAAAGCTCATTTTCTAAAGGAAAAGAAGAGAAGCTGATTCTGAAGTCCTCCGTCGATGGCTTGTGAGGTGCATAATGTGTAACGGTTGAGTGTGTATTTAGTGTGCAGTGCTTTACCTGTGGTACAGTAGCTAGCATGTTCTTAGCTTATTTCCTCTTATATACAAGTGAAGGTTATtccaggaactttcaataaatgacctggttttccagaaatcctggtagGAGGTTACCAgctttcctgcttattccctcctgattccgggaATCCTCCAACCGGGATATCTGGAAAACCAGGGAGTTTATTGAATgttcctggaattttgcaaccctattcAGGGTGCGCATGGCAGTCCAGTGCTCCATATAGACACTGAGCAGAGTGGTACTCTGTGTGGCTGCTGAGAGGGACTAGAGAGTAGAAGGGCTGGATGACCGGGGAAGGGGATAGGCAAGGCTGGTGGGCTAAGGCGACCGACCGTCAGTTGGTAGTTTCGGGTTGTGACGATGGGTACTGACACAGGAAGTGGTCACCAGTAGAAGGAGCGGGACAGGAAGTTGGCGGCGGTGCTGAGCCAGCCCACGCCATCTGTGATGGAGCCCACACGGGTCACGGCCTTGTCCTGCTCCTGAGACGGGCTTTCCTCCTCAGGGAGGTAGTCTGGGACGTCCACGTTgtgctccaccaccaccacctccgcACCCTCCTGGAATGGAAGC

Function

NR:

description
armadillo repeat-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1441940 False 2724 lncRNA 0.44 2 15671900 15674666
TU1441936 True 2561 lncRNA 0.44 2 15672063 15674666

Neighbor

gene id symbol gene type direction distance location
LOC110489682 LOC106590392 coding upstream 137120 15532470 ~ 15534780 (+)
LOC110489655 LOC106590438 coding upstream 306140 15345480 ~ 15365760 (+)
LOC110489660 pan3 coding upstream 478850 15166247 ~ 15194945 (+)
LOC110489664 LOC106590452 coding upstream 524066 15142902 ~ 15147834 (+)
LOC110489665 NA coding upstream 531123 15137323 ~ 15140777 (+)
LOC110489686 LOC106590396 coding downstream 22230 15696896 ~ 15706601 (+)
LOC110490928 dnjc5 coding downstream 65358 15740024 ~ 15747900 (+)
LOC110489687 LOC106590397 coding downstream 76123 15750789 ~ 15759102 (+)
LOC110489688 rrs1 coding downstream 131552 15806218 ~ 15807665 (+)
LOC110489689 LOC106590398 coding downstream 140777 15815443 ~ 15819297 (+)
G1261940 NA non-coding upstream 1979 15669548 ~ 15669921 (+)
G1261917 NA non-coding upstream 7134 15664087 ~ 15664766 (+)
G1261918 NA non-coding upstream 9363 15662053 ~ 15662537 (+)
G1261922 NA non-coding upstream 40689 15630904 ~ 15631211 (+)
G1261919 NA non-coding upstream 44668 15624413 ~ 15627232 (+)
G1261967 NA non-coding downstream 42608 15717274 ~ 15718014 (+)
G1262013 NA non-coding downstream 97248 15771914 ~ 15772162 (+)
G1262014 NA non-coding downstream 97530 15772196 ~ 15772465 (+)
G1262027 NA non-coding downstream 112215 15786881 ~ 15787081 (+)
G1260946 LOC106590444 other upstream 649847 15020992 ~ 15022053 (+)
LOC110489673 LOC106590441 other upstream 757777 14905377 ~ 14914892 (+)
G1260745 NA other upstream 1003361 14666659 ~ 14668539 (+)
LOC110489644 NA other upstream 1308960 14360048 ~ 14362944 (+)
G1261980 NA other downstream 61264 15735930 ~ 15736417 (+)
mcmdc2 mcmdc2 other downstream 218302 15885437 ~ 15895996 (+)
LOC110489737 LOC106590377 other downstream 3185445 18859697 ~ 18866106 (+)
epb41l3a LOC106590342 other downstream 3999447 19598284 ~ 19680110 (+)

Expression


Co-expression Network