XLOC_031793 (sema5bb)


Basic Information

Item Value
gene id XLOC_031793
gene name sema5bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 4033832 ~ 4146073 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062280
GTGAAATGGTTAATATTCATGAGCAAACCTTCCTTATTGGCAGGTTAGCGAGCAAAGGAATGACgagatcattaatattcatgagcagaGCGGTAGCAGCAGTAGTACTGTAGTAGAAAGTAGATTCGCCCCGGTGTGAGGCGGTGCGGTCGGCGAGAGCGCGCAGAAACCTTCACAGATCTAAACAGAGTCTTCTGGACATCCCACACAGCTGAAAATACTCCTGAATTTACCAGACTGCATAGGATTCAGATCTGAAGTGTATCCGATGCGCTCCTGAGGAATGAGCCCTTGTTGACAGCACACTCCTGGGACCTTCTCACTCTTCTGATACTGGAGTGTTTCTTGTGGTAATAATGGCAGCGATGGTGTTCTGGGCCGGATCACTGTCTTTCGTCGGACTGGTCATCTTTCACCTCCTCTTTCTGCCTGTGGTCACGTCACAGACACCATCATCACCCCCAGACACCCCTGACCCGCAGCCTGAAGAGTGCCGGAGAAAAATGCACCCTGTTACCTCCTACACAGCGTTGAGTCCGTGGCTCTTCTCGTTCTCTGTGCCTGGAGTGAACGACTACTCACCACTCACACTCGACCTCAGCAGGAGCCAGCTGATTGTGGGAGCCAGGAATCATCTCTTCCGGCTGAGTTTGAGTAACATCTCTCTTCTGCAGGCCACAGAATGGGGTGTTGACGAAACTACCAGGAGATCCTGCCAGAGCAAAGGAAAGACCGAGGACGAGTGCCAGAATTATGTGCGAGTCCTCCTGCTGAACGGCAGTCGTTTGTTCACCTGCGGTACGAACGCCTTCATGCCCGTCTGTGTGACGCGTCCCGTGACGGACATCAGCAGCGTTCTGGACTCCATCAGCGGTGTGGCTCGCTGTCCCTACGATCCTCGACACAACTCCACAGCCATGATCACAGAGAGCGGAGAGGTGTACGCCGCCACTGTGACCGATTTCTCTAGCCGGGACCCCATCATTTACCGCAGCCTGGGGAACATGCCGCCTCTGCGCACCGCACAGTACAACTCTAAATGGCTCAACGATCCTCACTTCATCTCGGCGTATGAGGTGAGCCGTTTCACATACGTGTTTCTGCGAGAGAACGCAGTGGAGCAGGATTGTGGGAAGACGGTTTTCTCTCGCGTGGCTCGCGTGTGTCAGAACGATATCGGCGGTCGCTTCCTTCTGGAAGACACGTGGACCACATTCATGAAGGCCCGGCTAAACTGCTCACGATCTGGAGACGTTCCCTTCTACTACCATGAGCTGCAGAGCACTTTCTATTTGCCCGAACAAGACCTCATCTACGGGGTCTTCACCACCAATGTGAACAGTATTGCTGCGTCAGCCGTGTGTGCGTTTAACCTCAGTGCCATCACTCAGGCCTTTAACGGGCCTTTCCGCTATCAGGAGAACCCTCGCACCAGCTGGCTGTCCACTCCAAACCCCGTCCCAAACTTCCAGTGCGGGACGGTGAATGATTCGGGGCCGGGTGCTAATCTGACAGAGCGCAGTCTTCAAGACGCCCAGCGGCTCTTTCTGATGAGCGACGTGGTTCAGCCCATCTCCACAGACCCGCTGGTCATGCAGGACAACATCCGCTTCTCCAAACTGGCGGTGGACATCGTTCAGGGCAGAGACACGCTTTACCACGTCATGTACATCGGCACAGAATATGGCACCATCATCAAGGCCTTGTCCACTAATAATAAGAGTCTGCGTGGATGTTATTTGGAGGAGATGAACATTCTGCCGGGAAACAAGCAGGAGCCCATCCTGAACCTGCAGATTCTGCACAGCGATAGATCTCTGTTTGTGGGGCTTCCCAGCAGAGTGTTGAAGATCCCTTTGGAAAGATGCTCTAACTACATCACTGAACAGGATTGTCTGGGTGCCAGGGATCCGTACTGCGGCTGGGACCGTAAAGAGAAGCGCTGCACCACCATTGAGGACAGCTCCAACATGAGCCAATGGAGCCAGGACATCACAAAGTGCCCTGAGAGGAACCTCACTCAAGATGGCGGCTTTAGTGATTGGTCAACATGGCAGGCTTGTAACCATGATGACGGAGGGGAAGGCATCAGCACATGCCAGTGTCGCACCCGGGCCTGCGATCACCCTCGACCCCAGTGTGGAGGACTAAAGTGTGTCGGGGCTAATATAGAGGTGGCCAACTGCTCCAGgaaTGGAGGCTGGACACCCTGGTCATCCTGGGCCGAGTGCAGCACCAGCTGTGGGATTGGGTTTGAGGTCCGTCAGCGATCCTGTAACAATCCTTCACCTCGACACGGAGGACGCGTGTGTGTAGGCCAGGCCCGAGAGGAGAGACTGTGTAATGAGAAGAATCCATGTCCTGTCCCGATGTCCTGGGTCTCCTGGAGCGCCTGGTCCAAATGTAGCGTGGCCTGCGGTGGTGGAGTCCAATCCCGCGTTCGAACCTGCGAGAATGGCAACACGTGTCCTGGATGCCCTCTGGAGTACAGAGCGTGTAATTTGGACTCGTGTGCTGAAGTGAGGCGAACGACACCGTGGACCCCCTGGTATCCTGTTAATGTGACCCAGCTGGGAGCGCGGCAGGAGCAGAGGGTCCGATATACCTGTAGAGCTCTGCTGGCAGACCCTCATGACTTACAGCTCGGCAAACGCAAGATAGAGACACGCCTCTGTCCCACCACTGACGGAGCTGCTGCCTGCGAGACTGATGgtCTGGTTGAGGATTTGTTGAGAATGGGTCGACCTGTAACACGAGTGCAAGGAGCCGCCTGGGCATTATGGGAAACCTGGTCTACATGTTCAAAAGAATGTTCCAAAGGCTTCCGCACACGCAAACGCTCCTGTGCCGCACCGGATGGCAAGAGCACACCGTTCGCCTGCAGCGGAGCCCCGGTCGAGTATCAGGACTGCAACACTCAACCCTGCCCAGTGAAGGGGGCGTGGTCATGCTGGTCTTCCTGGTCTCAGTGTTCTACTTCCTGTGGTGGCGGTCATCACCAGCGCTCCCGTTCCTGCTCGAACCCTGCGCCGGCTTATTCTGGAGACATCTGCATCGGCCTGCACACAGAGGAGGCGCTCTGTAACACACACGAGTGTGAAGGTGGGTGGGGGGCGTGGTCAGAGTGGGCAGAGTGTAATGGGGAGGGGCTTCAGCTCCGGGCTCGTACATGTGAAATAAGCCCCGCCTCCTGTCTTGGAAACTCCACAGATCAGAGACAGTGTCGGCCCAATGAGAGCGCagTGCTGTCAAAAGGACAGAAGAGGAGCACAAACTGTGGAGGGTTTTCTCTGTTCCACCTGGTTCTGACTGGTGCATGTTGTTTTCTGGGAGCCGTTTTACTCTCCATCCTGGTCTATGTGTACTGTCAGAGACTCCGCAAACCTCCGCAAGAATCTGCAGTCATCCATCCCAGCACCCCAAACCATCTCCACTATAAAGACAACAGCTGCGCGCCCAAGAACGATTTATACACACCCATGGAGTTCAAGACTCTCAATAAGAACAACCTGCTTCCACCAGATGAAAGCTGCAACTTCTTCCCATCGCCCTTACCACAGACCAACGTCTACACCACCACATATTACCCGTCTCCGCTGGGCAAATACGACTTCCCTTCAATGGATTCCCCCTGCAGCTTCATGCACAGCTGA
>TCONS_00062281
GGCAGCGATGGTGTTCTGGGCCGGATCACTGTCTTTCGTCGGACTGGTCATCTTTCACCTCCTCTTTCTGCCTGTGGTCACGTCACAGACACCATCATCACCCCCAGACACCCCTGACCCGCAGCCTGAAGAGTGCCGGAGAAAAATGCACCCTGTTACCTCCTACACAGCGTTGAGTCCGTGGCTCTTCTCGTTCTCTGTGCCTGGAGTGAACGACTACTCACCACTCACACTCGACCTCAGCAGGAGCCAGCTGATTGTGGGAGCCAGGAATCATCTCTTCCGGCTGAGTTTGAGTAACATCTCTCTTCTGCAGGCCACAGAATGGGGTGTTGACGAAACTACCAGGAGATCCTGCCAGAGCAAAGGAAAGACCGAGGACGAGTGCCAGAATTATGTGCGAGTCCTCCTGCTGAACGGCAGTCGTTTGTTCACCTGCGGTACGAACGCCTTCATGCCCGTCTGTGTGACGCGTCCCGTGACGGACATCAGCAGCGTTCTGGACTCCATCAGCGGTGTGGCTCGCTGTCCCTACGATCCTCGACACAACTCCACAGCCATGATCACAGAGAGCGGAGAGGTGTACGCCGCCACTGTGACCGATTTCTCTAGCCGGGACCCCATCATTTACCGCAGCCTGGGGAACATGCCGCCTCTGCGCACCGCACAGTACAACTCTAAATGGCTCAACGATCCTCACTTCATCTCGGCGTATGAGGTGAGCCGTTTCACATACGTGTTTCTGCGAGAGAACGCAGTGGAGCAGGATTGTGGGAAGACGGTTTTCTCTCGCGTGGCTCGCGTGTGTCAGAACGATATCGGCGGTCGCTTCCTTCTGGAAGACACGTGGACCACATTCATGAAGGCCCGGCTAAACTGCTCACGATCTGGAGACGTTCCCTTCTACTACCATGAGCTGCAGAGCACTTTCTATTTGCCCGAACAAGACCTCATCTACGGGGTCTTCACCACCAATGTGAACAGTATTGCTGCGTCAGCCGTGTGTGCGTTTAACCTCAGTGCCATCACTCAGGCCTTTAACGGGCCTTTCCGCTATCAGGAGAACCCTCGCACCAGCTGGCTGTCCACTCCAAACCCCGTCCCAAACTTCCAGTGCGGGACGGTGAATGATTCGGGGCCGGGTGCTAATCTGACAGAGCGCAGTCTTCAAGACGCCCAGCGGCTCTTTCTGATGAGCGACGTGGTTCAGCCCATCTCCACAGACCCGCTGGTCATGCAGGACAACATCCGCTTCTCCAAACTGGCGGTGGACATCGTTCAGGGCAGAGACACGCTTTACCACGTCATGTACATCGGCACAGAATATGGCACCATCATCAAGGCCTTGTCCACTAATAATAAGAGTCTGCGTGGATGTTATTTGGAGGAGATGAACATTCTGCCGGGAAACAAGCAGGAGCCCATCCTGAACCTGCAGATTCTGCACAGCGATAGATCTCTGTTTGTGGGGCTTCCCAGCAGAGTGTTGAAGATCCCTTTGGAAAGATGCTCTAACTACATCACTGAACAGGATTGTCTGGGTGCCAGGGATCCGTACTGCGGCTGGGACCGTAAAGAGAAGCGCTGCACCACCATTGAGGACAGCTCCAACATGAGCCAATGGAGCCAGGACATCACAAAGTGCCCTGAGAGGAACCTCACTCAAGATGGCGGCTTTAGTGATTGGTCAACATGGCAGGCTTGTAACCATGATGACGGAGGGGAAGGCATCAGCACATGCCAGTGTCGCACCCGGGCCTGCGATCACCCTCGACCCCAGTGTGGAGGACTAAAGTGTGTCGGGGCTAATATAGAGGTGGCCAACTGCTCCAGgaaTGGAGGCTGGACACCCTGGTCATCCTGGGCCGAGTGCAGCACCAGCTGTGGGATTGGGTTTGAGGTCCGTCAGCGATCCTGTAACAATCCTTCACCTCGACACGGAGGACGCGTGTGTGTAGGCCAGGCCCGAGAGGAGAGACTGTGTAATGAGAAGAATCCATGTCCTGTCCCGATGTCCTGGGTCTCCTGGAGCGCCTGGTCCAAATGTAGCGTGGCCTGCGGTGGTGGAGTCCAATCCCGCGTTCGAACCTGCGAGAATGGCAACACGTGTCCTGGATGCCCTCTGGAGTACAGAGCGTGTAATTTGGACTCGTGTGCTGAAGTGAGGCGAACGACACCGTGGACCCCCTGGTATCCTGTTAATGTGACCCAGCTGGGAGCGCGGCAGGAGCAGAGGGTCCGATATACCTGTAGAGCTCTGCTGGCAGACCCTCATGACTTACAGCTCGGCAAACGCAAGATAGAGACACGCCTCTGTCCCACCACTGACGGAGCTGCTGCCTGCGAGACTGATGgtCTGGTTGAGGATTTGTTGAGAATGGGTCGACCTGTAACACGAGTGCAAGGAGCCGCCTGGGCATTATGGGAAACCTGGTCTACATGTTCAAAAGAATGTTCCAAAGGCTTCCGCACACGCAAACGCTCCTGTGCCGCACCGGATGGCAAGAGCACACCGTTCGCCTGCAGCGGAGCCCCGGTCGAGTATCAGGACTGCAACACTCAACCCTGCCCAGTGAAGGGGGCGTGGTCATGCTGGTCTTCCTGGTCTCAGTGTTCTACTTCCTGTGGTGGCGGTCATCACCAGCGCTCCCGTTCCTGCTCGAACCCTGCGCCGGCTTATTCTGGAGACATCTGCATCGGCCTGCACACAGAGGAGGCGCTCTGTAACACACACGAGTGTGAAGGTGGGTGGGGGGCGTGGTCAGAGTGGGCAGAGTGTAATGGGGAGGGGCTTCAGCTCCGGGCTCGTACATGTGAAATAAGCCCCGCCTCCTGTCTTGGAAACTCCACAGATCAGAGACAGTGTCGGCCCAATGAGAGCGCagTGCTGTCAAAAGGACAGAAGAGGAGCACAAACTGTGGAGGGTTTTCTCTGTTCCACCTGGTTCTGACTGGTGCATGTTGTTTTCTGGGAGCCGTTTTACTCTCCATCCTGGTCTATGTGTACTGTCAGAGACTCCGCAAACCTCCGCAAGAATCTGCAGTCATCCATCCCAGCACCCCAAACCATCTCCACTATAAAGACAACAGCTGCGCGCCCAAGAACGATTTATACACACCCATGGAGTTCAAGACTCTCAATAAGAACAACCTGCTTCCACCAGATGAAAGCTGCAACTTCTTCCCATCGCCCTTACCACAGACCAACGTCTACACCACCACATATTACCCGTCTCCGCTGGGCAAATACGACTTCCCTTCAATGGATTCCCCCTGCAGCTTCATGCACAGCTGA

Function

symbol description
sema5bb Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to act upstream of or within cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SEMA5B (semaphorin 5B).

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0048675 axon extension biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-778 Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to act upstream of or within cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SEMA5B (semaphorin 5B).

Ensembl:

ensembl_id ENSDARG00000075648

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062280 False 3653 mRNA 0.55 22 4033832 4146073
TCONS_00062281 True 3295 mRNA 0.56 20 4084739 4146073

Neighbor

gene id symbol gene type direction distance location
XLOC_031792 CU914157.1 coding upstream 29376 4001317 ~ 4004456 (+)
XLOC_031791 dync1i2b coding upstream 77252 3934738 ~ 3956580 (+)
XLOC_031790 NA coding upstream 154617 3877672 ~ 3879215 (+)
XLOC_031789 gorasp2 coding upstream 158717 3864040 ~ 3875115 (+)
XLOC_031788 gad1b coding upstream 170380 3827751 ~ 3863452 (+)
XLOC_031794 trim25l coding downstream 14506 4160579 ~ 4176841 (+)
XLOC_031795 STRADB coding downstream 83287 4229360 ~ 4250154 (+)
XLOC_031796 nbeal1 coding downstream 109246 4255319 ~ 4365331 (+)
XLOC_031797 rbm26 coding downstream 224862 4370935 ~ 4403253 (+)
XLOC_031798 NA coding downstream 372085 4518158 ~ 4520247 (+)
XLOC_031787 NA non-coding upstream 207707 3816049 ~ 3826125 (+)
XLOC_031780 NA non-coding upstream 452541 3575051 ~ 3581291 (+)
XLOC_031776 NA non-coding upstream 611099 3419776 ~ 3422733 (+)
XLOC_031802 NA non-coding downstream 1052196 5198269 ~ 5399444 (+)
XLOC_031803 CU074421.2 non-coding downstream 1538108 5684181 ~ 5684295 (+)
XLOC_031804 NA non-coding downstream 1792392 5938465 ~ 5981858 (+)
XLOC_031805 NA non-coding downstream 1939163 6085236 ~ 6086132 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_07131727_07169937 SEMA5BB coding CI01000024 null 7131013 ~ 7169937 (-)