XLOC_031794 (trim25l)


Basic Information

Item Value
gene id XLOC_031794
gene name trim25l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 4160579 ~ 4176841 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062284
TCGTCGTTTCTGACTGAAAATACAGTATGTTTGTTCTTTAATAtctggaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgttactcTGTATGTGAGCAAAATTCAGAGTATGGGACAGGTCACGATTTTTCTTTACTTCTTATAATACCTCTTGTTcttgtaaaattaaagtaaaaaccgATTTTGTTATGCAGACCTGGCAACCCTGTATAGAACCCACATAACAACGCTCAGGTAGCCGACTAGTTAATTGGCGCCAACTTTCCTGCAGGCAAACGCTTCTCAAGTTTTTCCTCAGAAAAATGTATCATGCGTATTTTAAGACGTTTAAATTGTAAGTTAAACTTaactatttaatttatgtatgttATAAGCGTTTTAAATTGTAACTTTATTCTGTCACTTGCGTATGTTGTCGCGCAAATCATGAAGGGATGCACACGAGGCCTGATTTTCTCCCCAAACCTGTTCGGTTAGTGAGTGTCTCACCCACAGCCGGTCAAACTGGAGAGACAGACACTCACAGCTGGAGCACTTACACTGAGGAAACtttattaagttaatttgttttatcTCGTTTGACTTTACACCCTCAAGATGAGTGGTCGCCTTTGGACCGAGGAACAGTTCAACTGTCCAGTCTGTTTGGATCTTCCAACCGACCCCGCGACCATCCCTTGCGGCCACAGTTACTGCATGGACTGCATTGCGGATTATTGGAATAACGAGGGAAGGAAAAACGGCTCCTACAGTTGTCCTGAATGCCGGCAGACCTTTAACCCTCGTCCCACTCTCTGCCGGAACACAATGCTGGCCGAAGCTGTGGAGCAGCTCCGCCGCGGTACCCTCAGCACCGCAGGCCGCGAGTCCATCAAGAGCGCGCGGCGAGCAGCAAACTCCGCGTACGAGAAAGCAAACAAAGCCACCAAAGCCACTCGGAAAAAGCTGCCGGGTTCAGCCGTGCCATGTGACCGCTGCCCGGAGCCCAAAGCAGCCGTGAAGACATGTTTGGTGTGCATGGCCTCGTTCTGCGAGACTCACCTGAAGCCCCACAACACGCAGGAGAAGCTGAAGAGCCACGAGCTGATCGCGCCCACCGGAGACCTGAGCCAGAAGATCTGCCCCGAGCACAAGTATCTGCAGGAGTTCTTCTGCCGCTCCTGCCAGATGTTCGTCTGCTGGCTCTGCACCAGCAACCAGCACAAGGGCCACGAAAGTGTGTCCACACAGGCCGAGAGGTCAGACAAACAGAAAGAGCTGGGCGCAGTTCTGTCAGAGAACCATCAGAGGCTccaggacagagagagagagctgaaagACATGAAGAAAGTCGTAGACACGCTCACGCGCTCCTCAGACATGGTGCGAGACGATGCGGATGCTGTCCTCTCTGAGCTCCAGGAGTCAGTGCAGCGGATGCTGGATCTGCTGCTGGATGTGATGGTCTCCAGTGGGCAGGAGAAACTCACAGAGGCCCAGGAAGTGGTCAACAAACTGGAGGCCGAAGTCAAACAGCTGAAGAGAAAAGACGGAGAGCTGAAGGAGATCATCAACTGTCCTGACAATATACACTTTCTAAAGACATATCAGACTCTGTGTTGTCCGCTGGAGGCAGGAGAACTGGGAACTGTGACCGCCAACCCTGAAGCCACCTTTGATGCCGTCAGGAGCGTCATTGTCCAGTTTAGGGAGAGAGTGGAGGAGATGTGTGACCAGGAGCTGGACAAGATCAACAAGACcgTCTACAACACAACAGCGTTCACAGTGGCAGAACGAAACGGGCAGAAAACTGGCATCATGAAACTATTTTCTGGGAAGGGAACCAGAGCTGGTCGTGCACAAGtcaacacacgcacacaagtcAGCAGAACCAGTGAGCCAAGAGCTAACAGAAGTATTACGAACCCTCAAAGATCATCAAGATCGCCGAGAGAGGAGCAAAACGACACCAACAGAAACCAAAATGCAAGGACACAAAGTGAAACACAGAGAAGAGAAGAAAGAGAAAGCAATGATGCAGACATCAGGAGTTTAAATTCAGTGAGATCAAGAGGGAGAGCGAGAGGAGAAAACAGAGATCAGGAAAGTGAAAATCAGACCTCTCAAAGACGTCAGAGTACACAGAGCAGAAGTACACGAGATGAAGAACAAGCAGACCGCTGGAGTTTGAGTTCAGTCAGATCGAGACTGAGGAGAGAGGATAAAGAACCAGTGAATGGAGGATCTCAGAGTCCCTCACAGCAAAGATCAAACCCTGCAGACAGACAGCAGACAGCCAGACAATCGGACAGATGGAGTCTGAGCTCTCTCTTACCCAGAAACAGGAGGAAGAAACAGGACACAGTGAAAGAGGCCACGCCCACTATACCGGAGGCGGAGACAACGAGGCCTCGTAGCCCCACCTCTGCCAGTGTCTGGGGAGAGCCAACAGAAGTGAATCCTGCTCTGTTCCTGGACTCACCTACAGACAATCCCTTCATCAATCCAGCTTTCCCTACATTGCGGGAGATTAACATTGACAGCATTCAGGCTGCAGAGCCCAGAAGCAGAGAAGAGTTCCTGCAGTATGCTTGTAATCTGACTCTGGACCAAACCACAGCCCACCGCCGTCTGCTAGTGTCTGATGGAGACTCGGTGGCCACCCTGCAGCAGACCACACAGCCATACCCGGACGTCCCGCAGCGCTTCGATGGCTGGACGCAGGTGCTCTGTCTGCAGCCGCTTACCTCTGACCGCTGCTACTGGGAGGTAGAGTGGAGGGGGCGAGGCTCATCTGTGGGCGTGGTCAGTGGGTCCATGCCTCGCAAAGGGGCGGATTCGAGGGCGGGGCTTGGGTATAACAGCCAATCATGGAGTTTGGAGCTGTCTGACATGTGCTGCGCAGCCATGCACGCTAATCAGAAGGTGGAGATCCCTGTGACCTACAGCCCTCGTGTCGGGGTGTTCCTGGACAGGAGCGCAGGGACTCTGAGTTTCTATAGCGTGGATGACGAGCTGCTGCCTCTTTATAAGTTTCAGGGCTCGTTCCCGCAGTCGCTGTATGCTGCGTTCGGGGTGGGCTGTGGCGTCGGGGTCGGCCTGGATTTTGCCATGGGGCAGTTCAGCTCCACTTCAGACAGCATTAAAATATGTCCCTTGTGA
>TCONS_00062283
TCGTCGTTTCTGACTGAAAATACAGTATGTTTGTTCTTTAATAtctggaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgttactcTGTATGTGAGCAAAATTCAGAGTATGGGACAGGTCACGATTTTTCTTTACTTCTTATAATACCTCTTGTTcttgtaaaattaaagtaaaaaccgATTTTGTTATGCAGACCTGGCAACCCTGTATAGAACCCACATAACAACGCTCAGGTAGCCGACTAGTTAATTGGCGCCAACTTTCCTGCAGGCAAACGCTTCTCAAGTTTTTCCTCAGAAAAATGTATCATGCGTATTTTAAGACGTTTAAATTGTAAGTTAAACTTaactatttaatttatgtatgttATAAGCGTTTTAAATTGTAACTTTATTCTGTCACTTGCGTATGTTGTCGCGCAAATCATGAAGGGATGCACACGAGGCCTGATTTTCTCCCCAAACCTGTTCGGTTAGTGAGTGTCTCACCCACAGCCGGTCAAACTGGAGAGACAGACACTCACAGCTGGAGCACTTACACTGAGGAAACtttattaagttaatttgttttatcTCGTTTGACTTTACACCCTCAAGATGAGTGGTCGCCTTTGGACCGAGGAACAGTTCAACTGTCCAGTCTGTTTGGATCTTCCAACCGACCCCGCGACCATCCCTTGCGGCCACAGTTACTGCATGGACTGCATTGCGGATTATTGGAATAACGAGGGAAGGAAAAACGGCTCCTACAGTTGTCCTGAATGCCGGCAGACCTTTAACCCTCGTCCCACTCTCTGCCGGAACACAATGCTGGCCGAAGCTGTGGAGCAGCTCCGCCGCGGTACCCTCAGCACCGCAGGCCGCGAGTCCATCAAGAGCGCGCGGCGAGCAGCAAACTCCGCGTACGAGAAAGCAAACAAAGCCACCAAAGCCACTCGGAAAAAGCTGCCGGGTTCAGCCGTGCCATGTGACCGCTGCCCGGAGCCCAAAGCAGCCGTGAAGACATGTTTGGTGTGCATGGCCTCGTTCTGCGAGACTCACCTGAAGCCCCACAACACGCAGGAGAAGCTGAAGAGCCACGAGCTGATCGCGCCCACCGGAGACCTGAGCCAGAAGATCTGCCCCGAGCACAAGTATCTGCAGGAGTTCTTCTGCCGCTCCTGCCAGATGTTCGTCTGCTGGCTCTGCACCAGCAACCAGCACAAGGGCCACGAAAGTGTGTCCACACAGGCCGAGAGGTCAGACAAACAGAAAGAGCTGGGCGCAGTTCTGTCAGAGAACCATCAGAGGCTccaggacagagagagagagctgaaagACATGAAGAAAGTCGTAGACACGCTCACGCGCTCCTCAGACATGGTGCGAGACGATGCGGATGCTGTCCTCTCTGAGCTCCAGGAGTCAGTGCAGCGGATGCTGGATCTGCTGCTGGATGTGATGGTCTCCAGTGGGCAGGAGAAACTCACAGAGGCCCAGGAAGTGGTCAACAAACTGGAGGCCGAAGTCAAACAGCTGAAGAGAAAAGACGGAGAGCTGAAGGAGATCATCAACTGTCCTGACAATATACACTTTCTAAAGACATATCAGACTCTGTGTTGTCCGCTGGAGGCAGGAGAACTGGGAACTGTGACCGCCAACCCTGAAGCCACCTTTGATGCCGTCAGGAGCGTCATTGTCCAGTTTAGGGAGAGAGTGGAGGAGATGTGTGACCAGGAGCTGGACAAGATCAACAAGACcgTCTACAACACAACAGCGTTCACAGTGGCAGAACGAAACGGGCAGAAAACTGGCATCATGAAACTATTTTCTGGGAAGGGAACCAGAGCTGGTCGTGCACAAGGACCTCCTCCACTGCCGTCAGTAAGCACACGAGGATCTGtcaacacacgcacacaagtcAGCAGAACCAGTGAGCCAAGAGCTAACAGAAGTATTACGAACCCTCAAAGATCATCAAGATCGCCGAGAGAGGAGCAAAACGACACCAACAGAAACCAAAATGCAAGGACACAAAGTGAAACACAGAGAAGAGAAGAAAGAGAAAGCAATGATGCAGACATCAGGAGTTTAAATTCAGTGAGATCAAGAGGGAGAGCGAGAGGAGAAAACAGAGATCAGGAAAGTGAAAATCAGACCTCTCAAAGACGTCAGAGTACACAGAGCAGAAGTACACGAGATGAAGAACAAGCAGACCGCTGGAGTTTGAGTTCAGTCAGATCGAGACTGAGGAGAGAGGATAAAGAACCAGTGAATGGAGGATCTCAGAGTCCCTCACAGCAAAGATCAAACCCTGCAGACAGACAGCAGACAGCCAGACAATCGGACAGATGGAGTCTGAGCTCTCTCTTACCCAGAAACAGGAGGAAGAAACAGGACACAGGGGGAGAGCCAACAGAAGTGAATCCTGCTCTGTTCCTGGACTCACCTACAGACAATCCCTTCATCAATCCAGCTTTCCCTACATTGCGGGAGATTAACATTGACAGCATTCAGGCTGCAGAGCCCAGAAGCAGAGAAGAGTTCCTGCAGTATGCTTGTAATCTGACTCTGGACCAAACCACAGCCCACCGCCGTCTGCTAGTGTCTGATGGAGACTCGGTGGCCACCCTGCAGCAGACCACACAGCCATACCCGGACGTCCCGCAGCGCTTCGATGGCTGGACGCAGGTGCTCTGTCTGCAGCCGCTTACCTCTGACCGCTGCTACTGGGAGGTAGAGTGGAGGGGGCGAGGCTCATCTGTGGGCGTGGTCAGTGGGTCCATGCCTCGCAAAGGGGCGGATTCGAGGGCGGGGCTTGGGTATAACAGCCAATCATGGAGTTTGGAGCTGTCTGACATGTGCTGCGCAGCCATGCACGCTAATCAGAAGGTGGAGATCCCTGTGACCTACAGCCCTCGTGTCGGGGTGTTCCTGGACAGGAGCGCAGGGACTCTGAGTTTCTATAGCGTGGATGACGAGCTGCTGCCTCTTTATAAGTTTCAGGGCTCGTTCCCGCAGTCGCTGTATGCTGCGTTCGGGGTGGGCTGTGGCGTCGGGGTCGGCCTGGATTTTGCCATGGGGCAGTTCAGCTCCACTTCAGACAGCATTAAAATATGTCCCTTGTGA
>TCONS_00062282
TCGTCGTTTCTGACTGAAAATACAGTATGTTTGTTCTTTAATAtctggaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgttactcTGTATGTGAGCAAAATTCAGAGTATGGGACAGGTCACGATTTTTCTTTACTTCTTATAATACCTCTTGTTcttgtaaaattaaagtaaaaaccgATTTTGTTATGCAGACCTGGCAACCCTGTATAGAACCCACATAACAACGCTCAGGTAGCCGACTAGTTAATTGGCGCCAACTTTCCTGCAGGCAAACGCTTCTCAAGTTTTTCCTCAGAAAAATGTATCATGCGTATTTTAAGACGTTTAAATTGTAAGTTAAACTTaactatttaatttatgtatgttATAAGCGTTTTAAATTGTAACTTTATTCTGTCACTTGCGTATGTTGTCGCGCAAATCATGAAGGGATGCACACGAGGCCTGATTTTCTCCCCAAACCTGTTCGGTTAGTGAGTGTCTCACCCACAGCCGGTCAAACTGGAGAGACAGACACTCACAGCTGGAGCACTTACACTGAGGAAACtttattaagttaatttgttttatcTCGTTTGACTTTACACCCTCAAGATGAGTGGTCGCCTTTGGACCGAGGAACAGTTCAACTGTCCAGTCTGTTTGGATCTTCCAACCGACCCCGCGACCATCCCTTGCGGCCACAGTTACTGCATGGACTGCATTGCGGATTATTGGAATAACGAGGGAAGGAAAAACGGCTCCTACAGTTGTCCTGAATGCCGGCAGACCTTTAACCCTCGTCCCACTCTCTGCCGGAACACAATGCTGGCCGAAGCTGTGGAGCAGCTCCGCCGCGGTACCCTCAGCACCGCAGGCCGCGAGTCCATCAAGAGCGCGCGGCGAGCAGCAAACTCCGCGTACGAGAAAGCAAACAAAGCCACCAAAGCCACTCGGAAAAAGCTGCCGGGTTCAGCCGTGCCATGTGACCGCTGCCCGGAGCCCAAAGCAGCCGTGAAGACATGTTTGGTGTGCATGGCCTCGTTCTGCGAGACTCACCTGAAGCCCCACAACACGCAGGAGAAGCTGAAGAGCCACGAGCTGATCGCGCCCACCGGAGACCTGAGCCAGAAGATCTGCCCCGAGCACAAGTATCTGCAGGAGTTCTTCTGCCGCTCCTGCCAGATGTTCGTCTGCTGGCTCTGCACCAGCAACCAGCACAAGGGCCACGAAAGTGTGTCCACACAGGCCGAGAGGTCAGACAAACAGAAAGAGCTGGGCGCAGTTCTGTCAGAGAACCATCAGAGGCTccaggacagagagagagagctgaaagACATGAAGAAAGTCGTAGACACGCTCACGCGCTCCTCAGACATGGTGCGAGACGATGCGGATGCTGTCCTCTCTGAGCTCCAGGAGTCAGTGCAGCGGATGCTGGATCTGCTGCTGGATGTGATGGTCTCCAGTGGGCAGGAGAAACTCACAGAGGCCCAGGAAGTGGTCAACAAACTGGAGGCCGAAGTCAAACAGCTGAAGAGAAAAGACGGAGAGCTGAAGGAGATCATCAACTGTCCTGACAATATACACTTTCTAAAGACATATCAGACTCTGTGTTGTCCGCTGGAGGCAGGAGAACTGGGAACTGTGACCGCCAACCCTGAAGCCACCTTTGATGCCGTCAGGAGCGTCATTGTCCAGTTTAGGGAGAGAGTGGAGGAGATGTGTGACCAGGAGCTGGACAAGATCAACAAGACcgTCTACAACACAACAGCGTTCACAGTGGCAGAACGAAACGGGCAGAAAACTGGCATCATGAAACTATTTTCTGGGAAGGGAACCAGAGCTGGTCGTGCACAAGGACCTCCTCCACTGCCGTCAGTAAGCACACGAGGATCTGtcaacacacgcacacaagtcAGCAGAACCAGTGAGCCAAGAGCTAACAGAAGTATTACGAACCCTCAAAGATCATCAAGATCGCCGAGAGAGGAGCAAAACGACACCAACAGAAACCAAAATGCAAGGACACAAAGTGAAACACAGAGAAGAGAAGAAAGAGAAAGCAATGATGCAGACATCAGGAGTTTAAATTCAGTGAGATCAAGAGGGAGAGCGAGAGGAGAAAACAGAGATCAGGAAAGTGAAAATCAGACCTCTCAAAGACGTCAGAGTACACAGAGCAGAAGTACACGAGATGAAGAACAAGCAGACCGCTGGAGTTTGAGTTCAGTCAGATCGAGACTGAGGAGAGAGGATAAAGAACCAGTGAATGGAGGATCTCAGAGTCCCTCACAGCAAAGATCAAACCCTGCAGACAGACAGCAGACAGCCAGACAATCGGACAGATGGAGTCTGAGCTCTCTCTTACCCAGAAACAGGAGGAAGAAACAGGACACAGTGAAAGAGGCCACGCCCACTATACCGGAGGCGGAGACAACGAGGCCTCGTAGCCCCACCTCTGCCAGTGTCTGGGGAGAGCCAACAGAAGTGAATCCTGCTCTGTTCCTGGACTCACCTACAGACAATCCCTTCATCAATCCAGCTTTCCCTACATTGCGGGAGATTAACATTGACAGCATTCAGGCTGCAGAGCCCAGAAGCAGAGAAGAGTTCCTGCAGTATGCTTGTAATCTGACTCTGGACCAAACCACAGCCCACCGCCGTCTGCTAGTGTCTGATGGAGACTCGGTGGCCACCCTGCAGCAGACCACACAGCCATACCCGGACGTCCCGCAGCGCTTCGATGGCTGGACGCAGGTGCTCTGTCTGCAGCCGCTTACCTCTGACCGCTGCTACTGGGAGGTAGAGTGGAGGGGGCGAGGCTCATCTGTGGGCGTGGTCAGTGGGTCCATGCCTCGCAAAGGGGCGGATTCGAGGGCGGGGCTTGGGTATAACAGCCAATCATGGAGTTTGGAGCTGTCTGACATGTGCTGCGCAGCCATGCACGCTAATCAGAAGGTGGAGATCCCTGTGACCTACAGCCCTCGTGTCGGGGTGTTCCTGGACAGGAGCGCAGGGACTCTGAGTTTCTATAGCGTGGATGACGAGCTGCTGCCTCTTTATAAGTTTCAGGGCTCGTTCCCGCAGTCGCTGTATGCTGCGTTCGGGGTGGGCTGTGGCGTCGGGGTCGGCCTGGATTTTGCCATGGGGCAGTTCAGCTCCACTTCAGACAGCATTAAAATATGTCCCTTGTGA

Function

symbol description
trim25l Predicted to enable zinc ion binding activity.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040914-87 Predicted to enable zinc ion binding activity.

Ensembl:

ensembl_id ENSDARG00000020863

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062284 False 3183 mRNA 0.51 19 4160579 4176841
TCONS_00062283 False 3150 mRNA 0.51 19 4160579 4176841
TCONS_00062282 True 3222 mRNA 0.52 20 4160579 4176841

Neighbor

gene id symbol gene type direction distance location
XLOC_031793 sema5bb coding upstream 14506 4033832 ~ 4146073 (+)
XLOC_031792 CU914157.1 coding upstream 156123 4001317 ~ 4004456 (+)
XLOC_031791 dync1i2b coding upstream 203999 3934738 ~ 3956580 (+)
XLOC_031790 NA coding upstream 281364 3877672 ~ 3879215 (+)
XLOC_031789 gorasp2 coding upstream 285464 3864040 ~ 3875115 (+)
XLOC_031795 STRADB coding downstream 52519 4229360 ~ 4250154 (+)
XLOC_031796 nbeal1 coding downstream 78478 4255319 ~ 4365331 (+)
XLOC_031797 rbm26 coding downstream 194094 4370935 ~ 4403253 (+)
XLOC_031798 NA coding downstream 341317 4518158 ~ 4520247 (+)
XLOC_031799 CABZ01046895.1 coding downstream 351790 4528631 ~ 4536338 (+)
XLOC_031787 NA non-coding upstream 334454 3816049 ~ 3826125 (+)
XLOC_031780 NA non-coding upstream 579288 3575051 ~ 3581291 (+)
XLOC_031776 NA non-coding upstream 737846 3419776 ~ 3422733 (+)
XLOC_031802 NA non-coding downstream 1021428 5198269 ~ 5399444 (+)
XLOC_031803 CU074421.2 non-coding downstream 1507340 5684181 ~ 5684295 (+)
XLOC_031804 NA non-coding downstream 1761624 5938465 ~ 5981858 (+)
XLOC_031805 NA non-coding downstream 1908395 6085236 ~ 6086132 (+)

Expression


Co-expression Network