G1262510 (LOC106590398)


Basic Information

Item Value
gene id G1262510
gene name LOC106590398
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15816037 ~ 15817442 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1442604
tttgggcgCGCTGCTCTCACCCAGTACCACCTGCATACGTGGCCGGAGCTGAACCCCGTCTCGCTAAGCGGTGGACGTCTTTAGCTGGCTCATCGTCCTGGTGGCTCAGCTCCACAACATGCGAGGCCGGGAAGTATCCCTGCTGTCCGTTTTGCAGCCGCCCAAACCACCGGGCCTCATCATCTTTACACAGAACCAGGATGAACTCCCCCCGGGTCAGCGCCAGCTCATCTGGCCAGTGGGGCTTGTAGCTGCGCTTTACCACCATCTAGTGGATTAATCGAGAAATGCAACTTCAACACATTTTATATGTAACAAGACAGATGCAGTATTTGAGCACATGCAGCGGTGTTCCATATGTCGGTCACAGTATATGCTTGTCTCTGCAGTAAGTTTATATGATATAGTGTGCCTTGTGATGATCAAAGAGGTGTCATGACATGTCCAATTCATTGTTCCATTCCTTTCCCGCAGCTCGTTCACATTGAGTCTATGCCTGAATGAATGAAGAGGATTAGGTGGCTGGCTAAAACTCTCTGGATTACCTGGCTCACAGTTAAAAAGAAACCAAATCACCTGCTGTTCTCCATGATCTGTTCTCTTTAGTCTCATGGTAATGAATGACATAACAGACAGCATCTAATTTGAACTAACTAATGCAATTGTCTCTACAGACAAGTGTAGCTGGAGACACAAAAACAATCTACATTAGATATCTCATGCTTGCATGAACAGAATCCAGGGGATATGAGGGTGAATTGCGGAGCAAATCTACCAATTGTATCAACAAGTTGAATTCATCCAAGCATATTTTCATTCAACATAGTTAATACATATTGAGGATCTGAGAGTGAGCATTAACAGGAAAATAACTTGCCTTGTCAGCCTCTGCCTGTCTGAATTGGCATCGTCCCCGGTGAACTGGTAAACAAGGAGAGATGAATCAGCAAAAAATAGCTCCCATCACAAAGAACTATAGCAAAGCATCAGGGAATGAAAAGTTGGTGGAAAAAAGAACaacatgattctagatgtatttcAGTCTGCCATCAATACCCAGG

Function

NR:

description
uncharacterized protein LOC110489689

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1442604 True 1061 lncRNA 0.45 2 15816037 15817442

Neighbor

gene id symbol gene type direction distance location
LOC100135941 LOC100135941 coding downstream 53059 15761444 ~ 15762978 (-)
trnay-gua-4 NA coding downstream 66723 15749229 ~ 15749314 (-)
LOC110489684 LOC106590394 coding downstream 80661 15706942 ~ 15735376 (-)
LOC110489683 LOC106590393 coding downstream 119390 15672037 ~ 15696647 (-)
LOC110489656 abhd10 coding downstream 294640 15334691 ~ 15521397 (-)
LOC110489690 LOC106590399 coding upstream 4259 15821701 ~ 15845199 (-)
LOC110489693 NA coding upstream 77026 15894467 ~ 15898010 (-)
LOC110489694 LOC106590412 coding upstream 83038 15900480 ~ 15904342 (-)
LOC110489696 cops5 coding upstream 100953 15918395 ~ 15923805 (-)
LOC110490929 LOC106590401 coding upstream 120795 15938237 ~ 16035283 (-)
G1262508 NA non-coding downstream 1145 15814645 ~ 15814892 (-)
G1262507 NA non-coding downstream 1591 15814237 ~ 15814446 (-)
G1262506 NA non-coding downstream 2762 15813053 ~ 15813275 (-)
G1262501 NA non-coding downstream 12100 15803731 ~ 15803937 (-)
G1262498 NA non-coding downstream 16214 15799622 ~ 15799823 (-)
G1262521 NA non-coding upstream 30973 15848415 ~ 15849185 (-)
G1262563 NA non-coding upstream 117259 15934701 ~ 15935014 (-)
G1262573 NA non-coding upstream 139177 15956619 ~ 15956894 (-)
G1262503 NA other downstream 8420 15806250 ~ 15807617 (-)
G1261796 NA other downstream 309839 15505698 ~ 15506198 (-)
G1261602 NA other downstream 626221 15189546 ~ 15189816 (-)
G1261529 rpl21 other downstream 717321 15096280 ~ 15098716 (-)
G1261562 NA other downstream 736685 15077710 ~ 15080745 (-)
G1262745 NA other upstream 458567 16276009 ~ 16276552 (-)
G1263444 NA other upstream 828202 16645644 ~ 16646417 (-)
G1264199 LOC106590429 other upstream 1644386 17461828 ~ 17462977 (-)

Expression


Co-expression Network