G1262122


Basic Information

Item Value
gene id G1262122
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15961302 ~ 15969499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1442138
tatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatatccagctgtctatacagtacaaggtgaatatatccagctgtctatacagtacaaggtgaatatatccagctgtctatacagtacaaggtgaatatatccagctgtctatacagtacaaggtgaatatattcaggtatacagtacaaggt
>TU1442139
tatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatatccagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacaggataaggtgaatatattcaggtatacagtacaaggtgcatatattcagctgtctatacagtgcAAGATGAATATATATTCAGGTattcagtacaaggtgaatatattcaggtatacagtaccaggtgaatatattcaggtatGCAGTACatggtgaatatattcagctgtctatacagtgcAAGATTAATATATATTCAGGTattcagtacaaggtgaatatattcaggtatacagtacaag
>TU1442142
tatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatatccagctgtctatacagtacaaggtgaatatatccagctgtctatacagtacaaggtgaatatattcagctgtatatacagtacaaggtgaatatattcagctgtct
>TU1442145
gtctatacagtacaaggtgaatatattcaggtatacagtacaaggtgaatatattcaggtatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcaggtatacagtacaaggtgaatatattcaggtatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagc
>TU1442140
ATATATTcaggtatacagtacaaggtgaatatattcaggtattcagtacaaggtgaatatattcaggtattcagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcagctgtctatacagtacaaggtgaatatattcaggtatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1442138 False 281 lncRNA 0.36 3 15961302 15965882
TU1442139 False 487 lncRNA 0.34 3 15961302 15969499
TU1442142 False 239 lncRNA 0.35 3 15961302 15964228
TU1442145 False 239 lncRNA 0.33 3 15963519 15967736
TU1442140 True 260 lncRNA 0.33 2 15963877 15964168

Neighbor

gene id symbol gene type direction distance location
mcmdc2 mcmdc2 coding upstream 65766 15885437 ~ 15895996 (+)
LOC110489691 sgk3 coding upstream 75936 15848900 ~ 15885366 (+)
LOC110489689 LOC106590398 coding upstream 142005 15815443 ~ 15819297 (+)
LOC110489688 rrs1 coding upstream 153637 15806218 ~ 15807665 (+)
LOC110489687 LOC106590397 coding upstream 202200 15750789 ~ 15759102 (+)
LOC110489697 LOC106590402 coding downstream 120997 16090496 ~ 16114214 (+)
LOC110489699 LOC106590411 coding downstream 150846 16120345 ~ 16125640 (+)
LOC110490826 LOC106590409 coding downstream 214623 16184122 ~ 16187739 (+)
LOC110489703 LOC106590416 coding downstream 260327 16229826 ~ 16311952 (+)
LOC110489708 LOC106590383 coding downstream 494742 16464241 ~ 16493189 (+)
G1262111 NA non-coding upstream 12224 15947983 ~ 15949078 (+)
G1262108 LOC106590401 non-coding upstream 14459 15946009 ~ 15946843 (+)
G1262047 LOC106590399 non-coding upstream 135233 15825727 ~ 15826069 (+)
G1262046 NA non-coding upstream 136379 15824472 ~ 15824923 (+)
G1262190 LOC105030512 non-coding downstream 111147 16080646 ~ 16080887 (+)
G1262191 NA non-coding downstream 111551 16081050 ~ 16081492 (+)
G1262194 NA non-coding downstream 115852 16085351 ~ 16085566 (+)
G1262196 NA non-coding downstream 117561 16087060 ~ 16087271 (+)
G1262197 NA non-coding downstream 117781 16087280 ~ 16087518 (+)
G1261980 NA other upstream 224885 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 254763 15696896 ~ 15706601 (+)
LOC110489660 pan3 other upstream 766357 15166247 ~ 15194945 (+)
G1260946 LOC106590444 other upstream 939249 15020992 ~ 15022053 (+)
LOC110489737 LOC106590377 other downstream 2890612 18859697 ~ 18866106 (+)
epb41l3a LOC106590342 other downstream 3704614 19598284 ~ 19680110 (+)
G1267949 pck2 other downstream 4870796 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 5816722 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 7163360 23132828 ~ 23146739 (+)

Expression


Co-expression Network