G1262190 (LOC105030512)


Basic Information

Item Value
gene id G1262190
gene name LOC105030512
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16080646 ~ 16080887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1442220
attgcaatgtccgtactgtgagacgcctaagacagtgctacagggagacagaacggaGAGCTgaccgtcctcgcagtggcagaccacgtgtaacaacacctgcacaggatcggtacatccaaacatcacacctgcgggacaggtacaggatggcaacaacaactgcccgagttacaccaggaacgcacaatccctccatcagtgctcagactgtccacaataggctgagagaggctggactg

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1442220 True 242 lncRNA 0.55 1 16080646 16080887

Neighbor

gene id symbol gene type direction distance location
mcmdc2 mcmdc2 coding upstream 185110 15885437 ~ 15895996 (+)
LOC110489691 sgk3 coding upstream 195280 15848900 ~ 15885366 (+)
LOC110489689 LOC106590398 coding upstream 261349 15815443 ~ 15819297 (+)
LOC110489688 rrs1 coding upstream 272981 15806218 ~ 15807665 (+)
LOC110489687 LOC106590397 coding upstream 321544 15750789 ~ 15759102 (+)
LOC110489697 LOC106590402 coding downstream 9609 16090496 ~ 16114214 (+)
LOC110489699 LOC106590411 coding downstream 39458 16120345 ~ 16125640 (+)
LOC110490826 LOC106590409 coding downstream 103235 16184122 ~ 16187739 (+)
LOC110489703 LOC106590416 coding downstream 148939 16229826 ~ 16311952 (+)
LOC110489708 LOC106590383 coding downstream 383354 16464241 ~ 16493189 (+)
G1262122 NA non-coding upstream 111147 15961302 ~ 15969499 (+)
G1262111 NA non-coding upstream 131568 15947983 ~ 15949078 (+)
G1262108 LOC106590401 non-coding upstream 133803 15946009 ~ 15946843 (+)
G1262047 LOC106590399 non-coding upstream 254577 15825727 ~ 15826069 (+)
G1262191 NA non-coding downstream 163 16081050 ~ 16081492 (+)
G1262194 NA non-coding downstream 4464 16085351 ~ 16085566 (+)
G1262196 NA non-coding downstream 6173 16087060 ~ 16087271 (+)
G1262197 NA non-coding downstream 6393 16087280 ~ 16087518 (+)
G1262202 NA non-coding downstream 34829 16115716 ~ 16115924 (+)
G1261980 NA other upstream 344229 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 374107 15696896 ~ 15706601 (+)
LOC110489660 pan3 other upstream 885701 15166247 ~ 15194945 (+)
G1260946 LOC106590444 other upstream 1058593 15020992 ~ 15022053 (+)
LOC110489737 LOC106590377 other downstream 2779224 18859697 ~ 18866106 (+)
epb41l3a LOC106590342 other downstream 3593226 19598284 ~ 19680110 (+)
G1267949 pck2 other downstream 4759408 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 5705334 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 7051972 23132828 ~ 23146739 (+)

Expression


Co-expression Network