G1262197


Basic Information

Item Value
gene id G1262197
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16087280 ~ 16087518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1442227
attgtctagtttgagaaacagacgcctcacaagtcctcaactggcagcttcatcaaatagtacccgcaaaacaccagtctcaacgtcaacagtgtagaggcgactccgggatgctggccttctaggcagagttcctctgtccggtgtctgttcttttacccatcttaatcttttattttggccagtctgagacatggctttttctttgtaagtctgcctagaaggccagcatcctggag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1442227 True 239 lncRNA 0.48 1 16087280 16087518

Neighbor

gene id symbol gene type direction distance location
mcmdc2 mcmdc2 coding upstream 191744 15885437 ~ 15895996 (+)
LOC110489691 sgk3 coding upstream 201914 15848900 ~ 15885366 (+)
LOC110489689 LOC106590398 coding upstream 267983 15815443 ~ 15819297 (+)
LOC110489688 rrs1 coding upstream 279615 15806218 ~ 15807665 (+)
LOC110489687 LOC106590397 coding upstream 328178 15750789 ~ 15759102 (+)
LOC110489697 LOC106590402 coding downstream 2978 16090496 ~ 16114214 (+)
LOC110489699 LOC106590411 coding downstream 32827 16120345 ~ 16125640 (+)
LOC110490826 LOC106590409 coding downstream 96604 16184122 ~ 16187739 (+)
LOC110489703 LOC106590416 coding downstream 142308 16229826 ~ 16311952 (+)
LOC110489708 LOC106590383 coding downstream 376723 16464241 ~ 16493189 (+)
G1262196 NA non-coding upstream 9 16087060 ~ 16087271 (+)
G1262194 NA non-coding upstream 1714 16085351 ~ 16085566 (+)
G1262191 NA non-coding upstream 5788 16081050 ~ 16081492 (+)
G1262190 LOC105030512 non-coding upstream 6393 16080646 ~ 16080887 (+)
G1262122 NA non-coding upstream 117781 15961302 ~ 15969499 (+)
G1262202 NA non-coding downstream 28198 16115716 ~ 16115924 (+)
G1262210 NA non-coding downstream 31854 16119372 ~ 16119688 (+)
G1262253 NA non-coding downstream 115099 16202617 ~ 16202829 (+)
G1262257 NA non-coding downstream 134843 16222361 ~ 16222642 (+)
G1262275 NA non-coding downstream 169716 16257234 ~ 16257618 (+)
G1261980 NA other upstream 350863 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 380741 15696896 ~ 15706601 (+)
LOC110489660 pan3 other upstream 892335 15166247 ~ 15194945 (+)
G1260946 LOC106590444 other upstream 1065227 15020992 ~ 15022053 (+)
LOC110489737 LOC106590377 other downstream 2772593 18859697 ~ 18866106 (+)
epb41l3a LOC106590342 other downstream 3586595 19598284 ~ 19680110 (+)
G1267949 pck2 other downstream 4752777 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 5698703 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 7045341 23132828 ~ 23146739 (+)

Expression


Co-expression Network