G1262708


Basic Information

Item Value
gene id G1262708
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16229976 ~ 16230355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1442820
TTTGACTTTGTTGGGGTTGGGCTGCTTACGCCGAGACATactgatgatggtgatgatgggctaagaaaaaaaaaagaagctgcaAAGTTGTTCCGGAGAGGAATCAAAATGGCGTTTCTGAGGATGTGCAAAGTTCGACAACTTTGTTCCCCCCTCTTTCTTCCAAATTCCTAAAAAGGAAGATAGAAGAAAGAGTCCAGAGACGAGAGGAAAACACTTATTTCGCTATCCTCTCTGACCGTCCCCAAAGcgcagctctctcctctcccctaaccTGATAAGTAAGACGCATCACG
>TU1442821
CGCAATTAACATCACATATCGACTAAACCAGACAAATAAGGCAGAATTGAGAGAATAAGCCGATAAGCTAGCTAGGTACTTACGTTTGACTTTGTTGGGGTTGGGCTGCTTACGCCGAGACATactgatgatggtgatgatgggctaagaaaaaaaaaagaagctgcaAAGTTGTTCCGGAGAGGAATCAAAATGGCGTTTCTGAGGATGTGCAAAGTTCGACAACTTTGTTCCCCCCTCTTTCTTCCAAATTCCTAAAAAGGAAGATAGAAGAAAGAGTCCAGAGACGAGAGGAAAACACTTATTTCGCTATCCTCTCTGACCGTCCCCAAAGcgcagctctctcctctcccctaaccTGATAAGTAAGACGCATCACG
>TU1442818
TTTGACTTTGTTGGGGTTGGGCTGCTTACGCCGAGACATactgatgatggtgatgatgggctaagaaaaaaaaaagaagctgcaAAGTTGTTCCGGAGAGGAATCAAAATGGCGTTTCTGAGGATGTGCAAAGTTCGACAACTTTGTTCCCCCCTCTTTCTTCCAAATTCCTAAAAAGGAAGATAGAAGAAAGAGTCCAGAGACGAGAGGAAAACACTTATTTCGCTATCCTCTCTGACCGTCCCCAAAGcg
>TU1442822
CGCAATTAACATCACATATCGACTAAACCAGACAAATAAGGCAGAATTGAGAGAATAAGCCGATAAGCTAGCTAGGTACTTACGTTTGACTTTGTTGGGGTTGGGCTGCTTACGCCGAGACATactgatgatggtgatgatgggctaagaaaaaaaaaagaagctgcaAAGTTGTTCCGGAGAGGAATCAAAATGGCGTTTCTGAGGATGTGCAAAGTTCGACAACTTTGTTCCCCCCTCTTTCTTCCAAATTCCTAAAAAGGAAGATAGAAGAAAGAGTCCAGAGACGAGAGGAAAACACTTATTTCGCTATCCTCTCTGACCGTCCCCAAAGcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1442820 False 296 lncRNA 0.46 1 16229976 16230271
TU1442821 False 380 lncRNA 0.44 1 16229976 16230355
TU1442818 False 252 lncRNA 0.44 1 16230020 16230271
TU1442822 True 336 lncRNA 0.43 1 16230020 16230355

Neighbor

gene id symbol gene type direction distance location
shrprbck1r LOC106590417 coding downstream 10509 16206792 ~ 16219467 (-)
LOC110489701 LOC106590404 coding downstream 52835 16161354 ~ 16177141 (-)
LOC110489698 LOC106590406 coding downstream 85012 16129002 ~ 16144964 (-)
LOC110489700 LOC106590414 coding downstream 101274 16125368 ~ 16128702 (-)
LOC110490931 cpa6 coding downstream 150381 16038626 ~ 16079595 (-)
LOC110489704 LOC106590419 coding upstream 88544 16318899 ~ 16324594 (-)
LOC110489705 LOC106590420 coding upstream 98590 16328945 ~ 16439917 (-)
hus1 hus1 coding upstream 218090 16448445 ~ 16460069 (-)
LOC118938791 NA coding upstream 382145 16612010 ~ 16617742 (-)
LOC110489710 LOC106590425 coding upstream 437532 16667887 ~ 16680822 (-)
G1262699 NA non-coding downstream 9237 16220479 ~ 16220739 (-)
G1262697 NA non-coding downstream 27132 16202633 ~ 16202844 (-)
G1262694 NA non-coding downstream 29187 16200530 ~ 16200789 (-)
G1262650 NA non-coding downstream 144096 16085637 ~ 16085880 (-)
G1262624 NA non-coding downstream 186451 16043198 ~ 16043525 (-)
G1262709 NA non-coding upstream 4157 16234512 ~ 16234797 (-)
G1262728 NA non-coding upstream 18043 16248398 ~ 16248684 (-)
G1262730 NA non-coding upstream 20282 16250637 ~ 16250840 (-)
G1262732 NA non-coding upstream 22228 16252583 ~ 16253035 (-)
G1262737 NA non-coding upstream 38496 16268851 ~ 16269266 (-)
LOC110490929 LOC106590401 other downstream 194854 15938237 ~ 16035283 (-)
LOC110489690 LOC106590399 other downstream 384835 15821701 ~ 15845199 (-)
G1262503 NA other downstream 422359 15806250 ~ 15807617 (-)
G1261796 NA other downstream 723778 15505698 ~ 15506198 (-)
G1261602 NA other downstream 1040160 15189546 ~ 15189816 (-)
G1262745 NA other upstream 45654 16276009 ~ 16276552 (-)
G1263444 NA other upstream 415289 16645644 ~ 16646417 (-)
G1264199 LOC106590429 other upstream 1231473 17461828 ~ 17462977 (-)
G1265249 NA other upstream 1953436 18183791 ~ 18184123 (-)
G1265456 LOC106590371 other upstream 2346184 18576539 ~ 18580163 (-)

Expression


Co-expression Network