G1262770


Basic Information

Item Value
gene id G1262770
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16312472 ~ 16314140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1442898
gccaaactaaaaaagaaaagaaaatagaTCCACATAGTCTATAAAACACGTACAATGGTGTACATAAAGCTTTAGAATCAATAGTGATAATCGAAGTTCCAGGCCGATGCTGGGCGACCATTTTGTGGATTTGAAtccattattctctgcagcatCAATGTCGTAATCATAAATGGCTTCTCCTCAAGTCACATCTCTTCACCCCTCACTGGGTTtccaaataaatacaataaaaacagTCCATGTGCATTCTTATGGGACTCAtaatcacacacccacacagggaCAAATGAGAGAAGCAGAGTCCCTTGACAGTGTTTTTTGAGGACAGGATTGCATTTTGCATTCTAGTCTGCCAATACTTTCCCAGTGCCTGAGAGCAGGGTTGGGATGGGGGAGATACCGTGGTACAGCCACTAAAGGACAGTCTTCTGCATGGAGTAGCAGCTTCGCCACCtgtcaacacccccccccccacttaatACTCTGTGTTACGTTGAAGTTCCAAACACAGCTCAGAAATTCACTTCGGTTCATTCTCTCTCTGATTGCTTAGCCGTTTattgtcgtagtagtagtagtaggtttgTTTGTATGTTAGTGCCTGATGGGTAGTTGTCTGGCGGCGCCTGACTAGTCCAGTGCTCTCTGCTCTGTGGTTGTCCGTCAGCCTCCAGCCGATGCTGCCTGCGTCTTACAGTTCATATGTGCGCCATGAGGTTTCATATGTTTGCTTCTGAGGTTTCTTTATAGAAAATTACAAGGAAAAAAAGGAAATACATTTCTACAACATTCAGCCCTGCAAGGTGACATGATTGACATTTGAGTCCCACCTCGGAAATATACTCTTGGGCTAAGGGGGCGGTGGAAGGGGGGGTGAAGTGGGTGGTGGAAAGGGGGGGTGAGGTGggtggtggaa
>TU1442896
GATTCACACCTTTCCTTAATATATCTTTATTGCTTTCATTTTTTCAATACAGAACAGCTTACATTTCTGATTCTGAAGCGCCGTAATACCAGAAGGGAGGGAGCAGTGTAGCTAACAATGAAGGTTCTGATCCAGGTCCTTTCATCTGGTCAGTTCTGGTGTGGCCGTAGCAGCGGCGCAACGTTCCCTTTCACAACGAGTCAGAACgtcagacagtgacagacagccactttcatttttttttttttttttacagagtcACGACTTGATTTCCTCTTCAAAACGAGAGAGGATAATATGGTCAAGGGTGACAGAAATTTGAAGTGAGGGATAAAAATGAAGAatcaaaagaagaagaagaaaaaaaataaggaaaaacacCTTGTTTATGTGTATACCGTTCAAAAAGAATGCTGATGAAAATAGTCTTGACTACGCTTTCAACCACGAGGATTTGAGCACATCATTTTCTCTGTTCTCCTGATTTGAGTTCACAATCAAGTGCTAAATGTAGTGATTGACAGTTAAGCATTAGAAATAAAATCATGACTTGGAAGAACTTCTTGCAACTCAGGAAAATTAAGTATTGAATATGCATTTTATAAAGACcctgagagcgagagaaaaaaagaaaatccTTAATTGAACAAAAGGTTTACATGCAAAACTAACCTAAAACTCACCCATTATACACAATTAATTTCACAGTtttatacatatttatatatctgagaagaaaaaaaaatctttgccaaactaaaaaagaaaagaaaatagaTCCACATAGTCTATAAAACACGTACAATGGTGTACATAAAGCTTTAGAATCAATAGTGATAATCGAAGTTCCAGGCCGATGCTGGGCGACCATTTTGTGGATTTGAAtccattattctctgcagcatCAATGTCGTAATCATAAATGGCTTCTCCTCAAGTCACATCTCTTCACCCCTCACTGGGTTtccaaataaatacaataaaaacagTCCATGTGCATTCTTATGGGACTCAtaatcacacacccacacagggaCAAATGAGAGAAGCAGAGTCCCTTGACAGTGTTTTTTGAGGACAGGATTGCATTTTGCATTCTAGTCTGCCAATACTTTCCCAGTGCCTGAGAGCAGGGTTGGGATGGGGGAGATACCGTGGTACAGCCACTAAAGGACAGTCTTCTGCATGGAGTAGCAGCTTCGCCACCtgtcaacacccccccccccacttaatACTCTGTGTTACGTTGAAGTTCCAAACACAGCTCAGAAATTCACTTCGGTTCATTCTCTCTCTGATTGCTTAGCCGTTTattgtcgtagtagtagtagtaggtttgTTTGTATGTTAGTGCCTGATGGGTAGTTGTCTGGCGGCGCCTGACTAGTCCAGTGCTCTCTGCTCTGTGGTTGTCCGTCAGCCTCCAGCCGATGCTGCCTGCGTCTTACAGTTCATATGTGCGCCATGAGGTTTCATATGTTTGCTTCTGAGGTTTCTTTATAGAAAATTACAAGGAAAAAAAGGAAATACATTTCTACAACATTCAGCCCTGCAAGGTGACATGATTGACATTTGA
>TU1442899
gccaaactaaaaaagaaaagaaaatagaTCCACATAGTCTATAAAACACGTACAATGGTGTACATAAAGCTTTAGAATCAATAGTGATAATCGAAGTTCCAGGCCGATGCTGGGCGACCATTTTGTGGATTTGAAtccattattctctgcagcatCAATGTCGTAATCATAAATGGCTTCTCCTCAAGTCACATCTCTTCACCCCTCACTGGGTTtccaaataaatacaataaaaacagTCCATGTGCATTCTTATGGGACTCAtaatcacacacccacacagggaCAAATGAGAGAAGCAGAGTCCCTTGACAGTGTTTTTTGAGGACAGGATTGCATTTTGCATTCTAGTCTGCCAATACTTTCCCAGTGCCTGAGAGCAGGGTTGGGATGGGGGAGATACCGTGGTACAGCCACTAAAGGACAGTCTTCTGCATGGAGTAGCAGCTTCGCCACCtgtcaacacccccccccccacttaatACTCTGTGTTACGTTGAAGTTCCAAACACAGCTCAGAAATTCACTTCGGTTCATTCTCTCTCTGATTGCTTAGCCGTTTattgtcgtagtagtagtagtaggtttgTTTGTATGTTAGTGCCTGATGGGTAGTTGTCTGGCGGCGCCTGACTAGTCCAGTGCTCTCTGCTCTGTGGTTGTCCGTCAGCCTCCAGCCGATGCTGCCTGCGTCTTACAGTTCATATGTGCGCCATGAGGTTTCATATGTTTGCTTCTGAGGTTTCTTTATAGAAAATTACAAGGAAAAAAAGGAAATACATTTCTACAACATTCAGCCCTGCAAGGTGACATGATTGACATTTGA
>TU1442897
GATTCACACCTTTCCTTAATATATCTTTATTGCTTTCATTTTTTCAATACAGAACAGCTTACATTTCTGATTCTGAAGCGCCGTAATACCAGAAGGGAGGGAGCAGTGTAGCTAACAATGAAGGTTCTGATCCAGGTCCTTTCATCTGGTCAGTTCTGGTGTGGCCGTAGCAGCGGCGCAACGTTCCCTTTCACAACGAGTCAGAACgtcagacagtgacagacagccactttcatttttttttttttttttacagagtcACGACTTGATTTCCTCTTCAAAACGAGAGAGGATAATATGGTCAAGGGTGACAGAAATTTGAAGTGAGGGATAAAAATGAAGAatcaaaagaagaagaagaaaaaaaataaggaaaaacacCTTGTTTATGTGTATACCGTTCAAAAAGAATGCTGATGAAAATAGTCTTGACTACGCTTTCAACCACGAGGATTTGAGCACATCATTTTCTCTGTTCTCCTGATTTGAGTTCACAATCAAGTGCTAAATGTAGTGATTGACAGTTAAGCATTAGAAATAAAATCATGACTTGGAAGAACTTCTTGCAACTCAGGAAAATTAAGTATTGAATATGCATTTTATAAAGACcctgagagcgagagaaaaaaagaaaatccTTAATTGAACAAAAGGTTTACATGCAAAACTAACCTAAAACTCACCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1442898 False 919 lncRNA 0.46 1 16312472 16313390
TU1442896 False 1576 lncRNA 0.40 1 16312565 16314140
TU1442899 False 826 lncRNA 0.44 1 16312565 16313390
TU1442897 True 687 lncRNA 0.37 1 16313454 16314140

Neighbor

gene id symbol gene type direction distance location
shrprbck1r LOC106590417 coding downstream 93005 16206792 ~ 16219467 (-)
LOC110489701 LOC106590404 coding downstream 135331 16161354 ~ 16177141 (-)
LOC110489698 LOC106590406 coding downstream 167508 16129002 ~ 16144964 (-)
LOC110489700 LOC106590414 coding downstream 183770 16125368 ~ 16128702 (-)
LOC110490931 cpa6 coding downstream 232877 16038626 ~ 16079595 (-)
LOC110489704 LOC106590419 coding upstream 4759 16318899 ~ 16324594 (-)
LOC110489705 LOC106590420 coding upstream 14805 16328945 ~ 16439917 (-)
hus1 hus1 coding upstream 134305 16448445 ~ 16460069 (-)
LOC118938791 NA coding upstream 298360 16612010 ~ 16617742 (-)
LOC110489710 LOC106590425 coding upstream 353747 16667887 ~ 16680822 (-)
G1262767 NA non-coding downstream 8169 16303975 ~ 16304303 (-)
G1262754 NA non-coding downstream 24112 16287043 ~ 16288360 (-)
G1262742 NA non-coding downstream 38049 16273830 ~ 16274423 (-)
G1262741 NA non-coding downstream 39535 16272703 ~ 16272937 (-)
G1262739 NA non-coding downstream 41785 16270461 ~ 16270687 (-)
G1262777 NA non-coding upstream 28853 16342993 ~ 16349087 (-)
G1262781 NA non-coding upstream 41473 16355613 ~ 16355835 (-)
G1262794 NA non-coding upstream 74313 16388453 ~ 16391029 (-)
G1262818 NA non-coding upstream 112599 16426739 ~ 16458725 (-)
G1262843 NA non-coding upstream 158010 16472150 ~ 16473529 (-)
G1262745 NA other downstream 35920 16276009 ~ 16276552 (-)
LOC110490929 LOC106590401 other downstream 277350 15938237 ~ 16035283 (-)
LOC110489690 LOC106590399 other downstream 467331 15821701 ~ 15845199 (-)
G1262503 NA other downstream 504855 15806250 ~ 15807617 (-)
G1261796 NA other downstream 806274 15505698 ~ 15506198 (-)
G1263444 NA other upstream 331504 16645644 ~ 16646417 (-)
G1264199 LOC106590429 other upstream 1147688 17461828 ~ 17462977 (-)
G1265249 NA other upstream 1869651 18183791 ~ 18184123 (-)
G1265456 LOC106590371 other upstream 2262399 18576539 ~ 18580163 (-)
G1266471 NA other upstream 2794419 19108559 ~ 19109357 (-)

Expression


Co-expression Network