XLOC_003180


Basic Information

Item Value
gene id XLOC_003180
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5602340 ~ 5602721 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008384
ccaatgactgtaaaaaatatggacgacgcgacagccccttttgccattgaacgccttgagggcaaaacgcctgcttgacgggcacaaactgtcgcaaaagactgctgaaattggagccagacatgcgcagaaggactgtctgatggagccagaggaggagccgcgataatgagcggagtcgagcttccaaccaaacgctttatgtaaaatcaaacacgccccccgaacttctcactcgactgccggtgtctgcactataacaaacgctcactgatgtaaatagaagcacttacattaaaaaacacaataatatacggtttaaaaacggtgtgatgtaagctgttaaactttaataaaagcaatacatggtggactgcagaaa

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0043248 proteasome assembly biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0022624 proteasome accessory complex cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0005839 proteasome core complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008384 True 382 lncRNA 0.46 1 5602340 5602721

Neighbor

gene id symbol gene type direction distance location
XLOC_003178 CU855733.1 coding upstream 70764 5531443 ~ 5531576 (+)
XLOC_003177 slc35e1 coding upstream 86418 5499661 ~ 5515922 (+)
XLOC_003175 cse1l coding upstream 109149 5468629 ~ 5493191 (+)
XLOC_003176 CR559931.1 coding upstream 120456 5481753 ~ 5481884 (+)
XLOC_003174 ptprga coding upstream 139086 4953964 ~ 5463254 (+)
XLOC_003181 r3hdm4 coding downstream 63604 5666325 ~ 5674923 (+)
XLOC_003182 arid3a coding downstream 79041 5681762 ~ 5810958 (+)
XLOC_003183 ctdspl3 coding downstream 214481 5817202 ~ 5836286 (+)
XLOC_003184 ndufs7 coding downstream 239911 5842632 ~ 5852715 (+)
XLOC_003185 dazap1 coding downstream 277841 5880562 ~ 5925517 (+)
XLOC_003250 BX324177.11 misc downstream 5743082 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 5770165 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 5783641 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 5815312 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 5826672 11429393 ~ 11429689 (+)
XLOC_003170 NA non-coding upstream 1819215 3771266 ~ 3783125 (+)
XLOC_003169 NA non-coding upstream 1866537 3615750 ~ 3735803 (+)
XLOC_003164 NA non-coding upstream 2268626 3331113 ~ 3333714 (+)
XLOC_003187 NA non-coding downstream 352544 5955265 ~ 5966389 (+)
XLOC_003189 CT573239.2 non-coding downstream 467154 6069875 ~ 6074783 (+)
XLOC_003195 BX248501.1 non-coding downstream 603248 6205969 ~ 6224120 (+)
XLOC_003198 AL840638.1 non-coding downstream 720277 6322998 ~ 6324302 (+)
XLOC_003199 AL840638.2 non-coding downstream 725257 6327978 ~ 6328093 (+)

Expression


Co-expression Network