XLOC_031802


Basic Information

Item Value
gene id XLOC_031802
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 5198269 ~ 5399444 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064600
GAGAGCTTGTAGAATGcttaaacaatgttttaaaaaagatGCTGAAATGACGCTTTATCcatttcaaactcaaaaataGAAGCAGGTTGTTATAGTGTTTCCATATTTAACCCATTTAATTCATTCTCAAATATACTCAACTTCTCAAATAATCTATCCAatcaacagttaaaaaaaaagactacCACTTTTTCTTTTCAGTCATCCTTGTTTCTCGAAACCGTGTCACAATTTGAAAGACAAGATCGGCTGCGGCTTCTTTTtcattgtaattaaataatagtCGATCTCTGTTTTTGTCAAGCGTTTTGTTTTGTGCGACTACGATGCCAAATTAACCATTCACAATTCCATTTCACAAACGAGTATGGCTCATGAAAAGATGTTGAAATGACGCTCTATCAGCTTCAAACTCTGGTTTTCTTGGCTCCGAGGCTGAAGATAGAAGCGGGTTGTTACAGTCACTCCATACtgagagcacacacacaaacacacacacacacacacacaccctcagcAAGTGAAGCACACAGTCTCTCTGCCTGGGTGAGGAGCTGTTAGTGTGTAGCTAATGCTTTGAGGCAGATCAGAAGAGGGTTTCAGAGCAGCCCTTTACACCGCAGTGTGGAGGACTCGCTGACTCTCAGTGCCGGACGCTCACAGCTGGGCTCAATGCCAGAGAGGAAAAAGAAGAGAGCGAGAACAAAGATAAAGAGAGCTTGTTGGCGAAGGAAACTAGTGAATTCGGGTTCAAGAATGTGGCAAAGTACAATTAGCCCATAGGGAGCAACGCTAATCACTTTTCAGTGTATCATGGCGCAGGACGACTTCTACGAGCAGGCCTCCCCGGACAAGAGGACCGAAGCTGATGGCAACTCGGACCCCAACTCTGATGGACCTCTAGGACCCCGAGGCCTGGTGGAGGCCACAGAGATGTGCACTCAAGAGTGTCTGGTTCTGGGACACTCCGACAACTGTTGGATGCCGCCGAGCCTGACCTCATACCCATCACCCAAGTCCCCCGTATCCTCCTTCAACACCCAGAAGGAGTGGGCGAAAGAGAGACTCCTGAACGGACACACTCTGAGCCGCAGCTGGAAGAGTGACCGCGTGGGACAGGAGCCGTTCGGGGACCGCAAGACCTTCGGGAGCTCCGAGGGACATTTTGGGAGCGGCGGTGGCGGTGTTCATATGGCCGACATCCCATTGGCCAGCCTGAAATCTTACCAGCCTGCATCCGGCCCCGACAGTCCTAAAGAACAGCAGCTTTAa

Function

GO:

id name namespace
GO:0016056 rhodopsin mediated signaling pathway biological_process
GO:0009584 detection of visible light biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0042551 neuron maturation biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064600 True 1272 lncRNA 0.48 3 5198269 5399444

Neighbor

gene id symbol gene type direction distance location
XLOC_031801 pcdh9 coding upstream 214026 4872883 ~ 4984243 (+)
XLOC_031800 pou4f1 coding upstream 655264 4539953 ~ 4543005 (+)
XLOC_031799 CABZ01046895.1 coding upstream 661931 4528631 ~ 4536338 (+)
XLOC_031798 NA coding upstream 678022 4518158 ~ 4520247 (+)
XLOC_031797 rbm26 coding upstream 795016 4370935 ~ 4403253 (+)
XLOC_031803 CU074421.2 coding downstream 284737 5684181 ~ 5684295 (+)
XLOC_031804 NA coding downstream 539021 5938465 ~ 5981858 (+)
XLOC_031805 NA coding downstream 685792 6085236 ~ 6086132 (+)
XLOC_031806 BX324134.4 coding downstream 815598 6215042 ~ 6237589 (+)
XLOC_031807 BX324134.2 coding downstream 816350 6215794 ~ 6215910 (+)
XLOC_031792 CU914157.1 non-coding upstream 1193813 4001317 ~ 4004456 (+)
XLOC_031790 NA non-coding upstream 1319054 3877672 ~ 3879215 (+)
XLOC_031787 NA non-coding upstream 1372144 3816049 ~ 3826125 (+)
XLOC_031780 NA non-coding upstream 1616978 3575051 ~ 3581291 (+)
XLOC_031811 NA non-coding downstream 1319472 6718916 ~ 6741408 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_06159677_06165717 NA coding CI01000024 null 6159471 ~ 6165999 (+)