XLOC_031804


Basic Information

Item Value
gene id XLOC_031804
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 5938465 ~ 5981858 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064801
GCAACATGCTAAGCACATTTGAAATTAGCAGTGACTCAGTAAGCTGCCTTTGTAGTCTCCAGTCATCATTCAAGTTGTCTTTCACctttagttttgccttcaaaaACGATGTGTCTTGGGATACAGTTTCTAATTTCTGGCCCAGAGCCAATGTTTATGTTATTTAGCCATCAAACTCTTATGCTAGCTGTGCAGGAAATCCCAGTGGATCAATGAAGAGAAAGAGTGTCAGAAGCAGGCAGTTACTCTGTTGGCGAACGTCTTACCTGACACTTTTTATATTACTTTCATTCCGCTCGCTGACAGAGACCATGGCGGATCGGAACATTCTGCTATTGGTGTCGATGGAAGGCAGGAGCGGGACGCGGCTGTCATTTAGGATACAATAGGAGGAAACGTCCAACAAGCACCGTGGATCAATAATAGCACTCCTTTAGCAGCATCTTTACACTGGCACAGTTGACCAGTGTGAGCGCTATGAG
>TCONS_00064802
GCAACATGCTAAGCACATTTGAAATTAGCAGTGACTCAGTAAGCTGCCTTTGTAGTCTCCAGTCATCATTCAAGTTGTCTTTCACctttagttttgccttcaaaaACGATGTGTCTTGGGATACAGTTTCTAATTTCTGGCCCAGAGCCAATGTTTATGTTATTTAGCCATCAAACTCTTATGCTAGCTGTGCAGGAAATCCCAGTGGATCAATGAAGAGAAAGAGTGTCAGAAGCAGGCAGTTACTCTGTTGGCGAACGTCTTACCTGACACTTTTTATATTACTTTCATTCCGCTCGCTGACAGAGACCATGGCGGATCGGAACATTCTGCTATTGGTGTCGATGGAAGGCAGGAGCGGGACGCGGCTGTCATTTAGGATACAATAGGAGGAAACGTCCAACAAGCACCGTGGATCAATAATAGCACTCCTTTAGCAGGCTGCATATTGACATATTGAACCTCCGTGTGGAAGTGTGGAAAAGCTCAGCAGATGAGAATGGACGATGGATCCTCGAAGGATGGGTTAGACTCCTCTTCGCCCTCAAGAAGAAGACAATCTGCTGACAATCCTTCTGTCCTCCTCcagcaccatcatcatcatcatcatctattgAGATACAGTTGTCAGAGATACAGTATTAGTCATTTTGATgtattagcccctctgtatatttttGCCCCCGATATCTGTTTTATGGAAGATTTGCTTTttacaaccaaataaataaataaatacttatgggggctaataatattgaccttaaaatagttgtaaaaaataaaaactgcttttattctagccaaaataaaataattaagactttctccaggataaaaaaatattataggaaata
>TCONS_00062298
GCACATTTGAAATTAGCAGTGACTCAGTAAGCTGCCTTTGTAGTCTCCAGTCATCATTCAAGTTGTCTTTCACctttagttttgccttcaaaaACGATGTGTCTTGGGATACAGTTTCTAATTTCTGGCCCAGAGCCAATGTTTATGTTATTTAGCCATCAAACTCTTATGCTAGCTGTGCAGGAAATCCCAGTGGATCAATGAAGAGAAAGAGTGTCAGAAGCAGGCAGTTACTCTGTTGGCGAACGTCTTACCTGACACTTTTTATATTACTTTCATTCCGCTCGCTGACAGAGACCATGGCGGATCGGAACATTCTGCTATTGGTGTCGATGGAAGGCAGGAGCGGGACGCGGCTGTCATTTAGGATACAATAGGAGGAAACGTCCAACAAGCACCGTGGATCAATAATAGCACTCCTTTAGCAGGACGGATACTCGGAGGGGATGGGGAAAATCTCTCAGCATGGGACGTATCAAAGCCAGGCATCAGCGCAGTTTGTGGTCTAAATCTGCAACGAGGTCATTGAGAATCTGTTTGACTTTTCAACCAGTCAAACGTTAACTCGGTGGGAAATGGGGAGGAAAAAATACTTGTATATTACCATGGAACAATTGCTTTGAAGTGAATGTCACAACCCTTTGTTAGGTTTTCTTATCTAGGCTTTTTAATAGCAGAGGGATGAGCTGCTgacaggatgtttttttttttgtgtgtgtgtgtgtgttttttggctAACTTTGCGCTGAATttcttgtatttatattttacttctgcaccatttaaaataatttaattggaa

Function

GO:

id name namespace
GO:0009451 RNA modification biological_process
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function
GO:0008173 RNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117420

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064801 False 482 lncRNA 0.45 3 5938465 5981359
TCONS_00064802 False 857 lncRNA 0.40 3 5938465 5981858
TCONS_00062298 True 802 lncRNA 0.42 3 5938477 5961955

Neighbor

gene id symbol gene type direction distance location
XLOC_031803 CU074421.2 coding upstream 254170 5684181 ~ 5684295 (+)
XLOC_031802 NA coding upstream 539021 5198269 ~ 5399444 (+)
XLOC_031801 pcdh9 coding upstream 954222 4872883 ~ 4984243 (+)
XLOC_031800 pou4f1 coding upstream 1395460 4539953 ~ 4543005 (+)
XLOC_031799 CABZ01046895.1 coding upstream 1402127 4528631 ~ 4536338 (+)
XLOC_031805 NA coding downstream 103378 6085236 ~ 6086132 (+)
XLOC_031806 BX324134.4 coding downstream 233184 6215042 ~ 6237589 (+)
XLOC_031807 BX324134.2 coding downstream 233936 6215794 ~ 6215910 (+)
XLOC_031808 rps27a coding downstream 288828 6270686 ~ 6273519 (+)
XLOC_031809 bcl11ab coding downstream 509155 6491013 ~ 6541519 (+)
XLOC_031798 NA non-coding upstream 1418218 4518158 ~ 4520247 (+)
XLOC_031792 CU914157.1 non-coding upstream 1934009 4001317 ~ 4004456 (+)
XLOC_031790 NA non-coding upstream 2059250 3877672 ~ 3879215 (+)
XLOC_031811 NA non-coding downstream 737058 6718916 ~ 6741408 (+)
XLOC_031817 AL929341.1 non-coding downstream 898069 6879927 ~ 6880049 (+)
XLOC_031820 NA non-coding downstream 1225735 7207593 ~ 7208629 (+)

Expression


Co-expression Network