XLOC_031805


Basic Information

Item Value
gene id XLOC_031805
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 6085236 ~ 6086132 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064803
ctgagaatcttttttttttcctttaagtaTTTTTGCAGAGTGTCTTCCAAAAAGATAAAAAAGGAGCTTCTGATTTAGGAGTTTGAAACCGCCATTGTTACAAGAATAACCTAAATGACCTTGCCCAGACATCACAACGGCTATTTGACAAGTATGATGAAACAAGACAGAAGGATGAGGGGAACACCTGTGGAGCCGAGAGGAAATAACAAGAACTGGAAATGACAGCTCTGGTCAATCAAACGCTGGTAAATTAGACAGAGACCCGTACAAGCACACAGTATGGGACAGCTAGTTTCGTTACGGAGCACTGACCCAACCGATGGGGACGGGAGATCACACTAAACCCCATGTAGAGGGACTTTTAAGCACTTGTAATTCATCTCACTGTGTGTTCTGTGTCAGATGAACAGTGTCTTACTTGCTTTTCCAATCCTGGAAAAGACGTGATGTGGAGACAATAGAGTATAAGAGCAGACTCCCCACAGCAGTTTGACACCGAAGTCACGCTTCTAAATGCCTGAATGTCATTGCATTATATCATAAAATATCAAATCAAGTGGCATGATGCTTGACCTTTTTCTCATTTTGTAGTGACTTTTAAGCAGCTGGTTTCAAAGGTGATGTTTAATGGATGTATGAAGTCATGCAGGTGTCCTACAGACTaaccatttaacatttaatcaaatgAATGACATCAAATTAATGATGGTTTTATAGGAGATATGCTATACAAGACAGAGATAAAAAGTATCTACACATTAATAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064803 True 770 lncRNA 0.39 2 6085236 6086132

Neighbor

gene id symbol gene type direction distance location
XLOC_031804 NA coding upstream 103378 5938465 ~ 5981858 (+)
XLOC_031803 CU074421.2 coding upstream 400941 5684181 ~ 5684295 (+)
XLOC_031802 NA coding upstream 685792 5198269 ~ 5399444 (+)
XLOC_031801 pcdh9 coding upstream 1100993 4872883 ~ 4984243 (+)
XLOC_031800 pou4f1 coding upstream 1542231 4539953 ~ 4543005 (+)
XLOC_031806 BX324134.4 coding downstream 128910 6215042 ~ 6237589 (+)
XLOC_031807 BX324134.2 coding downstream 129662 6215794 ~ 6215910 (+)
XLOC_031808 rps27a coding downstream 184554 6270686 ~ 6273519 (+)
XLOC_031809 bcl11ab coding downstream 404881 6491013 ~ 6541519 (+)
XLOC_031810 zgc:113227 coding downstream 576347 6662479 ~ 6666426 (+)
XLOC_031798 NA non-coding upstream 1564989 4518158 ~ 4520247 (+)
XLOC_031792 CU914157.1 non-coding upstream 2080780 4001317 ~ 4004456 (+)
XLOC_031811 NA non-coding downstream 632784 6718916 ~ 6741408 (+)
XLOC_031817 AL929341.1 non-coding downstream 793795 6879927 ~ 6880049 (+)
XLOC_031820 NA non-coding downstream 1121461 7207593 ~ 7208629 (+)
XLOC_031826 AL953886.2 non-coding downstream 1343179 7429311 ~ 7435700 (+)

Expression


Co-expression Network