G1264198


Basic Information

Item Value
gene id G1264198
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 17472345 ~ 17551433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1444444
cagcaacactccccatccaacctgacagagcttgagaggatctgctgggaagaatgggagaaatgcatgtatgccaagcttgtagcatcatacccaagaagactccgctgtaatcgctgctttaacaaagtactgagtaaagggtctgaatacttatgtaaatgtgattttagaataaggctgtaacatgaaaaagacaaggggtctgaatactttccaaaggcactgtacatattttcAGAAATTGATTCAAGTGTATTTTATGGCTTTTGGCGAATGCATTCTAAAGTCACGCTGTtactactgcctgtaaacacagtccagttcaaagtgaattatGCCAGGCCCATGTGGCAAACGGCTTAATTGCATATAAGCCTACGGCGCACCTGTCTGCGGAGACTCtggtcctggacaagacagattGTTTTATTTACTCTAGTGTCTAACTCTCTAAAAGCACAGCtgtttcccactctatattgctatagaattttcacaaatgccttactatACGTCATTCCCAAACTTTTatgaaaatgtaaaacaaaataatCTTCCTGGGGGTGTATGCGAACAGATTTCATGTTACAAAgctgtcagttccacttgaaTTACTATGACATAcagtatttaatttaattttgtaAAATTTTCTTTGGCAGAAACTTTCTATTGTACAAATATTTATCACTGGAATTTTGTTTTAAGTTATGTATTTGTCATACTTCTTTCAAACTGTtgatgggctctccaaccctggtcctggatagctaccctcctgtaggtttttttGCACCAACCCCAGTTTTAACTTCCGCTCtacaaccagctaattattagGGTTGGAGAGCCTTGGGCTACACTGCATTAGCTCTACTGACCAAGAGATCGACATTGTGTGCAGTCTATGGAAATCATGTTGAATAGGGTAAGTGGAAATGCAGGGATAGTCTTTCATTTCCCAGTCTCGGCTCACACTAGCCGTCTGTCCTGCACTGTTCTAGTGAGCTatgatttgtttttttttcttatctAAATGTACGCTGTGCAGTTGAGTAATTATCTTGCAAATGAGACAACCAAATAAATGTTAATTGAAGTATGAACATGCCTTGTCTAATTTGACATTAAAGTTTGGTCCATTTCCGTGGCACGGAATTGAGATAAAGGAAATAGCCAATTTCAGatgtaaaatattttattttttgtaaatgATCTGATTCCACAACCCATCACACTCTGTATACTCTAAAAAGCCTTCCATTTTTTTTTCTTACATTAGATACTATACAGGACAAAGAAAAGACACATACTGTTAAGAGGTCTGAATATTGTACGAGGGAAAATTATGTACAATTTGAAAACATACATGCCATGTACTGTTTATACCGACTTTTGTGCACACAAATAACTTCATTTCATACTGGTCAGAAAAATGCTAGTACCAGATTGACTTTTGTGATTGAGTCAAGAAGTAAATCATACAATTTTTTTTCTCAACTAGCCAGCACGTTTCTTCTTCAAAAGAAATGTAAACAACAAATTTTGTCAAAAGCATAATGGAGTCTCCTGCATATGGTAAGTGAAAGACGTTAATTAACTGCATGAGGTAAATCAGACTACTGTGCGTATGATACAGTTAAAGAAGCCAACTGATGGTGTGGGTGGTTTCCAACCTAAATTCAGTTATCTAATTATACGTTCAAATCTAAGGGTTAGGATGTAACCGTCTCTGATTGGTGCTCTGTGCAATTCTTAAGATTGCGCATGTCAATGCAAATAAATTGTTGTAAAATTA
>TU1444457
cagcaacactccccatccaacctgacagagcttgagaggatctgctgggaagaatgggagaaatgcatgtatgccaagcttgtagcatcatacccaagaagactccgctgtaatcgctgctttaacaaagtactgagtaaagggtctgaatacttatgtaaatgtgattttagaataaggctgtaacatgaaaaagacaaggggtctgaatactttccaaaggcactgtacatattttcAGAAATTGATTCAAGTGTATTTTATGGCTTTTGGCGAATGCATTCTAAAGTCACGCTGTtactactgcctgtaaacacagtccagttcaaagtgaattatGCCAGGCCCATGTGGCAAACGGCTTAATTGCATATAAGCCTACGGCGCACCTGTCTGCGGAGACTCtggtcctggacaagacagattGTTTTATTTACTCTAGTGTCTAACTCTCTAAAAGCACAGCtgtttcccactctatattgctatagaattttcacaaatgccttactatACGTCATTCCCAAACTTTTatgaaaatgtaaaacaaaataatCTTCCTGGGGGTGTATGCGAACAGATTTCATGTTACAAAgctgtcagttccacttgaaTTACTATGACATAcagtatttaatttaattttgtaAAATTTTCTTTGGCAGAAACTTTCTATTGTACAAATATTTATCACTGGAATTTTGTTTTAAGTTATGTATTTGTCATACTTCTTTCAAACTGTtgatgggctctccaaccctggtcctggatagctaccctcctgtaggtttttttGCACCAACCCCAGTTTTAACTTCCGCTCtacaaccagctaattattagaatcaggtatGCAAGATTAGGGTTGGAGAGCCTTGGGCTACACTGCATTAGCTCTACTGACCAAGAGATCGACATTGTGTGCAGTCTATGGAAATCATGTTGAATAGGGTAAGTGGAAATGCAGGGATAGTCTTTCATTTCCCAGTCTCGGCTCACACTAGCCGTCTGTCCTGCACTGTTCTAGTGAGCTatgatttgtttttttttcttatctAAATGTACGCTGTGCAGTTGAGTAATTATCTTGCAAATGAGACAACCAAATAAATGTTAATTGAAGTATGAACATGCCTTGTCTAATTTGACATTAAAGTTTGGTCCATTTCCGTGGCACGGAATTGAGATAAAGGAAATAGCCAATTTCAGatgtaaaatattttattttttgtaaatgATCTGATTCCACAACCCATCACACTCTGTATACTCTAAAAAGCCTTCCATTTTTTTTTCTTACATTAGATACTATACAGGACAAAGAAAAGACACATACTGTTAAGAGGTCTGAATATTGTACGAGGGAAAATTATGTACAATTTGAAAACATACATGCCATGTACTGTTTATACCGACTTTTGTGCACACAAATAACTTCATTTCATACTGGTCAGAAAAATGCTAGTACCAGATTGACTTTTGTGATTGAGTCAAGAAGTAAATCATACAATTTTTTTTCTCAACTAGCCAGCACGTTTCTTCTTCAAAAGAAATGTAAACAACAAATTTTGTCAAAAGCATAATGGAGTCTCCTGCATATGGTAAGTGAAAGACGTTAATTAACTGCATGAGGTAAATCAGACTACTGTGCGTATGATACAGTTAAAGAAGCCAACTGATGGTGTGGGTGGTTTCCAACCTAAATTCAGTTATCTAATTATACGTTCAAATCTAAGGGTTAGGATGTAACCGTCTCTGATTGGTGCTCTGTGCAATTCTTAAGATTGCGCATGTCAATGCAAATAAATTGTTGTAAAATTA
>TU1444451
cagcaacactccccatccaacctgacagagcttgagaggatctgctgggaagaatgggagaaatgcatgtatgccaagcttgtagcatcatacccaagaagactccgctgtaatcgctgctttaacaaagtactgagtaaagggtctgaatacttatgtaaatgtgattttagaataaggctgtaacatgaaaaagacaaggggtctgaatactttccaaaggcactgtacatattttcAGAAATTGATTCAAGTGTATTTTATGGCTTTTGGCGAATGCATTCTAAAGTCACGCTGTtactactgcctgtaaacacagtccagttcaaagtgaattatGCCAGGCCCATGTGGCAAACGGCTTAATTGCATATAAGCCTACGGCGCACCTGTCTGCGGAGACTCtggtcctggacaagacagattGTTTTATTTACTCTAGTGTCTAACTCTCTAAAAGCACAGCtgtttcccactctatattgctatagaattttcacaaatgccttactatACGTCATTCCCAAACTTTTatgaaaatgtaaaacaaaataatCTTCCTGGGGGTGTATGCGAACAGATTTCATGTTACAAAgctgtcagttccacttgaaTTACTATGACATAcagtatttaatttaattttgtaAAATTTTCTTTGGCAGAAACTTTCTATTGTACAAATATTTATCACTGGAATTTTGTTTTAAGTTATGTATTTGTCATACTTCTTTCAAACTGTtgatgggctctccaaccctggtcctggatagctaccctcctgtaggtttttttGCACCAACCCCAGTTTTAACTTCCGCTCtacaaccagctaattattagGGTTGGAGAGCCTTGGGCTACACTGCATTAGCTCTACTGACCAAGAGATCGACATTGTGTGCAGTCTATGGAAATCATGTTGAATAGGGTAAGTGGAAATGCAGGGATAGTCTTTCATTTCCCAGTCTCGGCTCACACTAGCCGTCTGTCCTGCACTGTTCTAGTGAGCTatgatttgtttttttttcttatctAAATGTACGCTGTGCAGTTGAGTAATTATCTTGCAAATGAGACAACCAAATAAATGTTAATTGAAGTATGAACAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1444444 False 1801 lncRNA 0.37 3 17472345 17551433
TU1444457 False 1821 lncRNA 0.37 2 17472345 17551433
TU1444451 True 1112 lncRNA 0.39 3 17473034 17551433

Neighbor

gene id symbol gene type direction distance location
actr3b LOC106590428 coding downstream 245905 17207282 ~ 17226440 (-)
LOC110489714 LOC106590427 coding downstream 409453 16720067 ~ 17062892 (-)
LOC110490827 LOC106590390 coding downstream 769254 16695548 ~ 16703091 (-)
dph2 dph2 coding downstream 781819 16686641 ~ 16690526 (-)
LOC110489710 LOC106590425 coding downstream 791523 16667887 ~ 16680822 (-)
bcl2a LOC106590353 coding upstream 110278 17661711 ~ 17728790 (-)
LOC110489721 LOC106590355 coding upstream 191216 17742649 ~ 17746298 (-)
LOC110489722 LOC106590357 coding upstream 199815 17751248 ~ 17756522 (-)
LOC118938947 NA coding upstream 545291 18096724 ~ 18097899 (-)
cavin4b LOC106590360 coding upstream 618289 18169722 ~ 18178814 (-)
G1264243 NA non-coding downstream 3111 17468824 ~ 17469234 (-)
G1264242 NA non-coding downstream 4979 17467089 ~ 17467366 (-)
G1264183 NA non-coding downstream 91304 17380786 ~ 17381041 (-)
G1264181 NA non-coding downstream 92372 17379705 ~ 17379973 (-)
G1264174 NA non-coding downstream 99306 17372832 ~ 17373039 (-)
G1264287 NA non-coding upstream 18776 17570209 ~ 17572134 (-)
G1264298 NA non-coding upstream 33171 17584604 ~ 17584939 (-)
G1264310 NA non-coding upstream 46302 17597735 ~ 17598034 (-)
G1264335 NA non-coding upstream 90737 17642170 ~ 17642459 (-)
G1264340 NA non-coding upstream 97721 17649154 ~ 17649356 (-)
G1264199 LOC106590429 other downstream 9368 17461828 ~ 17462977 (-)
G1263444 NA other downstream 825928 16645644 ~ 16646417 (-)
G1262745 NA other downstream 1195793 16276009 ~ 16276552 (-)
LOC110490929 LOC106590401 other downstream 1437223 15938237 ~ 16035283 (-)
LOC110489690 LOC106590399 other downstream 1627204 15821701 ~ 15845199 (-)
G1265249 NA other upstream 632358 18183791 ~ 18184123 (-)
G1265456 LOC106590371 other upstream 1025106 18576539 ~ 18580163 (-)
G1266471 NA other upstream 1557126 19108559 ~ 19109357 (-)
G1266708 LOC106590345 other upstream 1883585 19435018 ~ 19453770 (-)
G1267414 NA other upstream 2716533 20267966 ~ 20268488 (-)

Expression


Co-expression Network