XLOC_031808 (rps27a)


Basic Information

Item Value
gene id XLOC_031808
gene name rps27a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 6270686 ~ 6273519 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062301
GGGCAGCCCTGCAGCTCTGAAGAGCACGTTGAACCCTCTGAAGGACCCTTTTCGGTTTCCGCCATCTAAGAGCTGGTGGTGGATTGAGCATCAAGATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAGCCCTCTGATACTATTGAAAATGTCAAGGCAAAGATTCAAGACAAGGAAGGAATCCCTCCTGATCAGCAGAGGTTGATCTTCGCTGGTAAGCAGCTGGAGGATGGACGAACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTTCATCTGGTGCTGAGGCTGCGTGGTGGCgcaaagaagaggaagaagaagtcCTACACCACCCCCAAGAAGAACAAGCATAAGAGAAAGAAGGTCAAGCTCGCTGTGCTGAAATACTACAAGGTTGACGAGAATGGCAAGATCCACCGTCTGCGCCGCGAGTGCCCTGCAGATGAGTGCGGAGCCGGGGTGTTCATGGCCAGCCACTTCGACCGTCATTACTGCGGAAAGTGCTGTCTGACCTACTGCTTCAACAAACCAGAGGACAAGTAGAGTACAGTCCTGACCAACATGCTCTGTGTCACACATGAGGCTGTCTGTGCTGGAGTTTGTACTTTGTAAATAAAATTGTGGCTCGCCACATTCAAAAATCAA
>TCONS_00062302
CCTTTTCGGTTTCCGCCATCTAAGAGCTGGTGGTGAGTTACTGCTACGAACAAATAGTAACGAAATAAATGTGATTTTGCTCATATATTGCTTTAAAAACGTTCCATAAACATTCAACACTGTTTTATGCACAGGTGGATTGAGCATCAAGATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAGCCCTCTGATACTATTGAAAATGTCAAGGCAAAGATTCAAGACAAGGAAGGAATCCCTCCTGATCAGCAGAGGTTGATCTTCGCTGGTAAGCAGCTGGAGGATGGACGAACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTTCATCTGGTGCTGAGGCTGCGTGGTGGCgcaaagaagaggaagaagaagtcCTACACCACCCCCAAGAAGAACAAGCATAAGAGAAAGAAGGTCAAGCTCGCTGTGCTGAAATACTACAAGGTTGACGAGAATGGCAAGATCCACCGTCTGCGCCGCGAGTGCCCTGCAGATGAGTGCGGAGCCGGGGTGTTCATGGCCAGCCACTTCGACCGTCATTACTGCGGAAAGTGCTGTCTGACCTACTGCTTCAACAAACCAGAGGACAAGTAGAGTACAGTCCTGACCAACATGCTCTGTGTCACACATGAGGCTGTCTGTGCTGGAGTTTGTACTTTGTAAATAAAATTGTGGCTCGCCACATTCAAAAAT
>TCONS_00062303
GCATCAAGATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAGCCCTCTGATACTATTGAAAATGTCAAGGCAAAGATTCAAGACAAGGAAGGTAAGTTGTCAgctgtgcttaaaaaaaaaattgtattatctttccttCTTCTAATTTGTTGTTAAAACCCAAAAAATTTACATCTAAATGTACCTCCAAACGCAGGAATCCCTCCTGATCAGCAGAGGTTGATCTTCGCTGGTAAGCAGCTGGAGGATGGACGAACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTTCATCTGGTGCTGAGGCTGCGTGGTGGCgcaaagaagaggaagaagaagtcCTACACCACCCCCAAGAAGAACAAGCATAAGAGAAAGAAGGTCAAGCTCGCTGTGCTGAAATACTACAAGGTTGACGAGAATGGCAAGATCCACCGTCTGCGCCGCGAGTGCCCTGCAGATGAGTGCGGAGCCGGGGTGTTCATGGCCAGCCACTTCGACCGTCATTACTGCGGAAAGTGCTGTCTGACCTACTGCTTCAACAAACCAGAGGACAAGTAGAGTACAGTCCTGACCAACATGCTCTGTGTCACACATGAGGCTGTCTGTGCTGGAGTTTGTACTTTGTAAATAAAATTGTGGCTCGCCACATTCAAAAATC
>TCONS_00062304
TGAATGTACCATCATTAACCCTGAAGAAATCTTCAAAACATAAGTGACATACTTGGACTTcttaatttgcctgtgatttgATTTGTGGAAACAATATTGTCAAGTGTTCTCTTATGTTTAATGTTTTCTGTAGGTTATAAGTGTTTTAAGTGAAGGTAATCTGACAAATCTAAACTGATATCAATGTTGTAGGTTGAGCCCTCTGATACTATTGAAAATGTCAAGGCAAAGATTCAAGACAAGGAAGGTAAGTTGTCAgctgtgcttaaaaaaaaaattgtattatctttccttCTTCTAATTTGTTGTTAAAACCCAAAAAATTTACATCTAAATGTACCTCCAAACGCAGGAATCCCTCCTGATCAGCAGAGGTTGATCTTCGCTGGTAAGCAGCTGGAGGATGGACGAACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTTCATCTGGTGCTGAGGCTGCGTGGTGGCgcaaagaagaggaagaagaagtcCTACACCACCCCCAAGAAGAACAAGCATAAGAGAAAGAAGGTCAAGCTCGCTGTGCTGAAATACTACAAGGTTGACGAGAATGGCAAGATCCACCGTCTGCGCCGCGAGTGCCCTGCAGATGAGTGCGGAGCCGGGGTGTTCATGGCCAGCCACTTCGACCGTCATTACTGCGGAAAGTGCTGTCTGACCTACTGCTTCAACAAACCAGAGGACAAGTAGAGTACAGTCCTGACCAACATGCTCTGTGTCACACATGAGGCTGTCTGTGCTGGAGTTTGTACTTTGTAAATAAAATTGTGGCTCGCCACATTCAAAAATC
>TCONS_00062305
gatttgATTTGTGGAAACAATATTGTCAAGTGTTCTCTTATGTTTAATGTTTTCTGTAGGTTATAAGTGTTTTAAGTGAAGGTAATCTGACAAATCTAAACTGATATCAATGTTGTAGGTTGAGCCCTCTGATACTATTGAAAATGTCAAGGCAAAGATTCAAGACAAGGAAGGAATCCCTCCTGATCAGCAGAGGTTGATCTTCGCTGGTAAGCAGCTGGAGGATGGACGAACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTTCATCTGGTGCTGAGGCTGCGTGGTGGCgcaaagaagaggaagaagaagtcCTACACCACCCCCAAGAAGAACAAGCATAAGAGAAAGAAGGTCAAGCTCGCTGTGCTGAAATACTACAAGGTTGACGAGAATGGCAAGATCCACCGTCTGCGCCGCGAGTGCCCTGCAGATGAGTGCGGAGCCGGGGTGTTCATGGCCAGCCACTTCGACCGTCATTACTGCGGAAAGTGCTGTCTGACCTACTGCTTCAACAAACCAGAGGACAAGTAGAGTACAGTCCTGACCAACATGCTCTGTGTCACACATGAGGCTGTCTGTGCTGGAGTTTGT

Function

symbol description
rps27a Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS27A (ribosomal protein S27a).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0016567 protein ubiquitination biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0031386 protein tag molecular_function

KEGG:

id description
ko03010 Ribosome
ko04120 Ubiquitin mediated proteolysis
ko04137 Mitophagy - animal
ko05171 Coronavirus disease - COVID-19
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05131 Shigellosis
ko05012 Parkinson disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03011 Ribosome
ko04121 Ubiquitin system
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-10018 Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS27A (ribosomal protein S27a).

Ensembl:

ensembl_id ENSDARG00000032725

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062301 False 668 mRNA 0.51 6 6270686 6273519
TCONS_00062302 False 721 mRNA 0.47 5 6270732 6273516
TCONS_00062303 False 684 lncRNA 0.47 4 6270875 6273517
TCONS_00062304 False 820 lncRNA 0.43 3 6271793 6273517
TCONS_00062305 True 601 processed_transcript 0.47 4 6271867 6273477

Neighbor

gene id symbol gene type direction distance location
XLOC_031806 BX324134.4 coding upstream 33097 6215042 ~ 6237589 (+)
XLOC_031807 BX324134.2 coding upstream 54776 6215794 ~ 6215910 (+)
XLOC_031805 NA coding upstream 184554 6085236 ~ 6086132 (+)
XLOC_031804 NA coding upstream 288828 5938465 ~ 5981858 (+)
XLOC_031803 CU074421.2 coding upstream 586391 5684181 ~ 5684295 (+)
XLOC_031809 bcl11ab coding downstream 217494 6491013 ~ 6541519 (+)
XLOC_031810 zgc:113227 coding downstream 388960 6662479 ~ 6666426 (+)
XLOC_031811 NA coding downstream 445397 6718916 ~ 6741408 (+)
XLOC_031812 sec23b coding downstream 505595 6779114 ~ 6796687 (+)
XLOC_031813 si:ch211-85n16.3 coding downstream 524001 6797520 ~ 6800387 (+)
XLOC_031802 NA non-coding upstream 871242 5198269 ~ 5399444 (+)
XLOC_031817 AL929341.1 non-coding downstream 606408 6879927 ~ 6880049 (+)
XLOC_031820 NA non-coding downstream 934074 7207593 ~ 7208629 (+)
XLOC_031826 AL953886.2 non-coding downstream 1155792 7429311 ~ 7435700 (+)
XLOC_031828 AL953886.1 non-coding downstream 1179836 7453355 ~ 7453831 (+)

Expression


Co-expression Network