XLOC_031809 (bcl11ab)


Basic Information

Item Value
gene id XLOC_031809
gene name bcl11ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 6491013 ~ 6541519 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062306
TCTGGACGGTCAAGTTCGCTGGCACGTCACGTCCGCACTTGAACTTGCAGCAGCTCAGGGGGCTTCGCTTACTTTCCATTCCTGTCTTGCATTCTCCTCCAAGAAGCCATGAAGCCCAACACAAGCGTCTTTTCGCCAGTACAAGCGTCTTTTCTGTACTATTCTCTATAATTCATGTGGGATACCCGATGCATCGCTGAAGAAGATTTTTACTCTGGACACCCTGAAGACTCTGGCGCTTCCCAATGTGAGCCCAGCTGAGACCGAGTCCAACATGTCTCGCCGCAAGCAGGGCAAACCCCAGCACTTAAGCAAACGGGAGTTTTCGCCCGAGCCCGTGACGGCAGATATCCCAGAGGACGGGGAAAGCAATCCCGGATCAGAACCATCCACCCCTAAAGGGGACCAGGACCTCCTCACCTGTGGTCAGTGCCGCTCCAGGTTTCCTTTGGCCGACATCCTGGTGTTCATTGAGCACAAACGCAGGCAGTGTCAAGGGCGCCTATGCATGGACAAAAGTTCAGACCTGCCACCATCGCCTCCCCCCGCAGGCCTGCGGCGAGCCTGCATCCCAGTGGAGGTGGCGGTTCAAGTTTCGCCCCACGGAGAGGAGCGTTTAGCCTCCACGCCACATGGATTACGGCCCAAGCAGGAGAATTTATCAGaaAAAGATGAGCCCAGCAGCTACACTTGCACAACCTGTAAGCAGCCCTTCAGCACTGCTTGGTTCCTGCTACAGCATGCCCAGAATACTCATGGTTTCCGAATATACCTGGAAAGCGAACCTGGAAGCCCATTAACTCCCCGTGTGGCCTCTGCTCCAGGCATGGGTGGTGACTGTGCCTCTCAGCCACCTATACATGCAGCCCATCTAGGAGACAGTAGTCCTTATAGCCTGATGAGGATAGCCAACAGAGATGGCTCCTCTGTTCCTAGAGAAGGTCGATATCCCAGGACGCCTCCACTCTTTAGTCCCCCACCTCGGCATCATATGAGCCCAGACGATCTGGCTTTGGCCCCCCACCACCCAAGCGCCTTTGACAGGGTACTGCGTCTTAATTCGGTACCCTTGGACTCCCCATCTATGGACTTCTCGAGACGACTACGGGAACTGGCAGGCAACTCTGCTGGCTCTTCTCCACCCATGTCGCCCAACAGGCCCAGCCCTATGCAAAGGCTGCTGCAGCCATTCCAGCCAGGGGCATCTCATTCTCCTTCTGGTCCCCGTTCAACACCTACACAGCAAACACCCACCCTGCCAACTGCAAAAGCAAAATCCTGCGAGTTCTGTGGGAAGTCCTTTAAGTTCCAGAGCAACTTAATTGTCCATAGGCGTAGTCAtaccggagagaaaccttacaagtgccACCTTTGCAACCATGCCTGCACGCAGGCCAGCAAGTTGAAGCGCCACATGAAGACCCATCGGCACAAATCCTCCTCCACTACCTCCAAATCAGACGATGGCCTTTCAACTGCGAGTTCACCTGAGCCAGGAACGAGTGATTTGCCAAGCAGTGCCACCAATGCTCTTAAATCAGTGGTTGCAAAGTTTAAAATCGAGAACAATGGCATGATCCCTGAAAATGGACAAGAGGAagatgaagaagaggaagaagaggaggaggatgaagaggaggaagaggaggaggaagatgaagaagaagaagaggaggaggaggagaatgaAAGTGAGGCTGGTGAAAGGAATGATATAAACTTTAGCTTGAGCCTAGAAGGTGCACGTCATCACGAGAACAATAGACAACGACACAACAAAAATGTGGAGGGAATTCAGGACTACCGAGAAGCGCTCAAACATTACAAACGAGGCGACCACCACAGATCAGCTCACGAGACATTTGGTGACAGTTCCCCAAAAGAGTCTTCTCAAGTCAACGAAGGGTACGGACACATCGTTAATGGGTCGGCGTCCTACTCAAATGATGACCTCTCAAGAAAACTTCTCGCTGGAAGTCCAGGTTCTGACAGTCCTCTAACTAAGCGAATCAAGGTGGAAAAAGACCTTGATCTTCCAACTCCTACAATTCCCAATTCAGAAAATGTGTACTCACAATGGCTGGCTGGATATGCCGCTTCGCGCCAGCTCAAGGATCCTATCCTCAACTTTGGGGACTCAAGACAATCACCTTTCGCCACCTCTTCAGAGCACTCCTCGGAGAATGGAAGTCTCAGGTTCTCCACTCCTCCTGGGGAGCTGGATGGAGGCACAGCCTCTGGGCGTAGCGGCACGGGAAGCAGAGCCAGTACACCCCACCTTCCCAGTGGTCGCCCCAGCTCCAAGGATGGCCGCCGTAGTGACACATGTGAGTTTTGTGGCAAGGTCTTCAAAAACTGCAGCAACTTGACAGTGCATCGCCGCAGCCATACTGGCGAAAGGCCGTATAAATGTGAGCTTTGTAGCTACGCCTGTGCTCAAAGCAGTAAGCTAACACGGCACATGAAGACGCATGGACAGACAGGCAAGGACGTTTACAAATGTGAGATATGCCACATGCCTTTCAGCGTCTACAGCACTCTGGAGAAGCACATGAAAAAATGGCACAACGATCGGCCATTGAGCATCGAAATTAAATCGGAGTAA

Function

symbol description
bcl11ab Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autism spectrum disorder; beta thalassemia; schizophrenia; and sickle cell anemia. Orthologous to human BCL11A (BAF chromatin remodeling complex subunit BCL11A).

GO:

id name namespace
GO:2000171 negative regulation of dendrite development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061009-4 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autism spectrum disorder; beta thalassemia; schizophrenia; and sickle cell anemia. Orthologous to human BCL11A (BAF chromatin remodeling complex subunit BCL11A).

Ensembl:

ensembl_id ENSDARG00000063153

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062306 True 2605 mRNA 0.52 3 6491013 6541519

Neighbor

gene id symbol gene type direction distance location
XLOC_031808 rps27a coding upstream 217494 6270686 ~ 6273519 (+)
XLOC_031806 BX324134.4 coding upstream 253424 6215042 ~ 6237589 (+)
XLOC_031807 BX324134.2 coding upstream 275103 6215794 ~ 6215910 (+)
XLOC_031805 NA coding upstream 404881 6085236 ~ 6086132 (+)
XLOC_031804 NA coding upstream 509155 5938465 ~ 5981858 (+)
XLOC_031810 zgc:113227 coding downstream 120960 6662479 ~ 6666426 (+)
XLOC_031811 NA coding downstream 177397 6718916 ~ 6741408 (+)
XLOC_031812 sec23b coding downstream 237595 6779114 ~ 6796687 (+)
XLOC_031813 si:ch211-85n16.3 coding downstream 256001 6797520 ~ 6800387 (+)
XLOC_031814 dtd1 coding downstream 260623 6802142 ~ 6809598 (+)
XLOC_031803 CU074421.2 non-coding upstream 806718 5684181 ~ 5684295 (+)
XLOC_031802 NA non-coding upstream 1091569 5198269 ~ 5399444 (+)
XLOC_031817 AL929341.1 non-coding downstream 338408 6879927 ~ 6880049 (+)
XLOC_031820 NA non-coding downstream 666074 7207593 ~ 7208629 (+)
XLOC_031826 AL953886.2 non-coding downstream 887792 7429311 ~ 7435700 (+)
XLOC_031828 AL953886.1 non-coding downstream 911836 7453355 ~ 7453831 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G125374 NA non-coding CI01000024 null 7029690 ~ 7031113 (-)