XLOC_031810 (zgc:113227)


Basic Information

Item Value
gene id XLOC_031810
gene name zgc:113227
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 6662479 ~ 6666426 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062307
AAGGCAATGACGTAATCTTACACGCGACGACGTAACCGCCCATAAACAAACATGGCGCACTACGCTCGTTGTTTGCAGGTCTGCCTTCTCGTTTTGAGAACGTATATTAACATACAAAGTAATTTAATTCAACGACTTCACGCAGTTCAAAGACAATGTCACAGACAACGTCTACGCACAAGACGACAAATAGCCTTGGTGTTGATGAGAAGACGGACGGCAACTGTGTGGTCACATCCGCGAGAGCACCGCTGGTGGGACGTCATTGTGCCTGAATTCACTCCAGAAGAGTTCATCCAGAATTTCCGAGTCTCGCGGGAGTCTTTCGAGTACATATGCCGCCGCCTCAGACATATGCTTGAACGAAAAGACACCAATTTCCGCTTGAGCGTACCTGTAAAGAAACGAGTTGCCATTGCGCTCTGCAAGCTCGCCACTGGCAGCGAGTATCGATATGTCAGTCAGCTTTTCGGGGTTGGTGTGAGCACTGTGTTCAACTGTGTGCAGGACTTCTGCAGTGCCGTCATTAAAATTCTTGTGCCCGTGCACATGAAATTTCCAAGTCCCGAAAAGCTGAAGGAGATGGCAGACGTCTTCGAGAATTGCTGGAACGTACCACAGTGTATTGGCTCAATTGATGCACACCACATCCCAATAATAGCGCCTGAAAAAAACCCTCGTGGCTATCTTAACCGAAAAGGCTGGCATTCGGTGGTACTCCAAGCAGTAGTAGACGGGAACGGGCTCTTCTGGGATTTATGCGTTGGTTTTTCTGGAAACCTAAGTGATGCAAGGGTCCTACGACAGTCTTATTTATGGAGTTTGTTGAGTGAAAGAGACTTGCTGAACCACAACAAAGTAGACATCTCCGGTTGTGATGTTGGATACTACCTAATTGGAGATTCAGCTTATCCCTTGCAGAACTGGTTGATGAAGCCGTTTCCCGATATTGGTGGACTGACCCCGCAGCAGGAAAGCTTCAACTCCAGGTTGAGTAGCGCCAGATCGGTTTCGGATCTGAGTTTCAAGAAGCTAAAGGCACGATGGCAGTGTCTCTTCAGGAGAAATGACTGTAAAGTGGAGCTGGTGAAGAAGATGGCTTTGACCTGCTGCGTGCTACACAATATCTGTGAGGAAAAAGGAACCCAGTTTTCAGAGGACCATTCAACTGACCATCTGAACTTGCAGCCCCCTGTTCAGGAATTTATAGAGAATGGACAACCAGAGGGGACGGACGTACGAGAAGCATTATCAGACTTCTTCATCAGACAGAGTGATATTATTCAAGTAGTAGTTTAATGCTATTATGGTTTTCGGATTCTTGGTGGAATCTTTTTATGAATATTCTTATAATTGATGTGTGGAGTATACAGCAGGAAAAATATGTATTGAACATGTCAAGTTTTTTTGGTTCCGTGGCTCTCGTTAGGGATTTGCACATCGATTCCTGTGTATCGATATATAGATACACAGAAGCTTTTAATTTGGTatcgatattttttttttaagtgttgatatttttactatattttaataatttctgcaTTACTAAATGTTTTAGCGCTGTGTACAGGATTGTCAGTGACACTTTGTATACAAGACGTTACACC

Function

symbol description
zgc:113227 Predicted to enable metal ion binding activity.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-32 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDARG00000058874

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062307 True 1610 mRNA 0.44 2 6662479 6666426

Neighbor

gene id symbol gene type direction distance location
XLOC_031809 bcl11ab coding upstream 120960 6491013 ~ 6541519 (+)
XLOC_031808 rps27a coding upstream 388960 6270686 ~ 6273519 (+)
XLOC_031806 BX324134.4 coding upstream 424890 6215042 ~ 6237589 (+)
XLOC_031807 BX324134.2 coding upstream 446569 6215794 ~ 6215910 (+)
XLOC_031805 NA coding upstream 576347 6085236 ~ 6086132 (+)
XLOC_031811 NA coding downstream 52490 6718916 ~ 6741408 (+)
XLOC_031812 sec23b coding downstream 112688 6779114 ~ 6796687 (+)
XLOC_031813 si:ch211-85n16.3 coding downstream 131094 6797520 ~ 6800387 (+)
XLOC_031814 dtd1 coding downstream 135716 6802142 ~ 6809598 (+)
XLOC_031815 RIN2 coding downstream 156166 6822592 ~ 6845993 (+)
XLOC_031804 NA non-coding upstream 680621 5938465 ~ 5981858 (+)
XLOC_031803 CU074421.2 non-coding upstream 978184 5684181 ~ 5684295 (+)
XLOC_031802 NA non-coding upstream 1263035 5198269 ~ 5399444 (+)
XLOC_031817 AL929341.1 non-coding downstream 213501 6879927 ~ 6880049 (+)
XLOC_031820 NA non-coding downstream 541167 7207593 ~ 7208629 (+)
XLOC_031826 AL953886.2 non-coding downstream 762885 7429311 ~ 7435700 (+)
XLOC_031828 AL953886.1 non-coding downstream 786929 7453355 ~ 7453831 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_07108968_07112980 NA coding CI01000024 null 7108968 ~ 7113051 (+)