G1265677


Basic Information

Item Value
gene id G1265677
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18918850 ~ 18919369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1446033
GGCTTACAATACATCTGGTCAACATTATGCAGAGTTcgagaaaataaaacaaatatgaccccccccccccccccaaaaaaaaaaatcatgattGTCACTCAATGTGCTTCACAAAAAACTCTCAATGAATAAATAGTCTGTCCAACTTCAtaatatttacaatattaacaatagTGACCACAATGAATGAAGCTTTGGATCTGCTGACGTGATGAAAAGCTTGAGTGTGGATGGTACCGGAGTGCgtttttcttctcctcctccagccaATGCGACCGAAGCAATGGCAGCATACACATTTAAGATTTTGCTTTCTTTCATAATGCCGGTTCAACTTTACAACTATACATGTCAAACAGCTTCATCATATTAACAAacactgttaaaaaaaaaattatcaatggaaattaaAAACAAGGATAAAAAACAACATATCATCAACATTACACTTATATCGCATTCCCCACAAAAA
>TU1446032
catgattGTCACTCAATGTGCTTCACAAAAAACTCTCAATGAATAAATAGTCTGTCCAACTTCAtaatatttacaatattaacaatagTGACCACAATGAATGAAGCTTTGGATCTGCTGACGTGATGAAAAGCTTGAGTGTGGATGGTACCGGAGTGCgtttttcttctcctcctccagccaATGCGACCGAAGCAATGGCAGCATACACATTTAAGATTTTGCTTTCTTTCATAATGCCGGTTCAACTTTACAACTATACATGTCAAACAGCTTCATCATATTAACAAacactgttaaaaaaaaaattatcaatggaaattaaAAACAAGGATAAAAAACAACATATCATCAACATTACACTTATATCGCATTCCCCACAAAAATGGAAATGACATTGATCATCCGATGAGGATTAAAAAGGCAATAAACAG
>TU1446034
catgattGTCACTCAATGTGCTTCACAAAAAACTCTCAATGAATAAATAGTCTGTCCAACTTCAtaatatttacaatattaacaatagTGACCACAATGAATGAAGCTTTGGATCTGCTGACGTGATGAAAAGCTTGAGTGTGGATGGTACCGGAGTGCgtttttcttctcctcctccagccaATGCGACCGAAGCAATGGCAGCATACACATTTAAGATTTTGCTTTCTTTCATAATGCCGGTTCAACTTTACAACTATACATGTCAAACAGCTTCATCATATTAACAAacactgttaaaaaaaaaattatcaatggaaattaaAAACAAGGATAAAAAACAACATATCATCAACATTACACTTATATCGCATTCCCCACAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1446033 False 472 lncRNA 0.36 1 18918850 18919321
TU1446032 False 434 lncRNA 0.35 1 18918936 18919369
TU1446034 True 386 lncRNA 0.34 1 18918936 18919321

Neighbor

gene id symbol gene type direction distance location
LOC110489737 LOC106590377 coding upstream 52744 18859697 ~ 18866106 (+)
LOC110489736 LOC106590352 coding upstream 63529 18850631 ~ 18855321 (+)
scn5lab LOC106590371 coding upstream 338734 18390157 ~ 18580116 (+)
LOC110489731 LOC106590368 coding upstream 593557 18306214 ~ 18325293 (+)
LOC110489727 LOC106590362 coding upstream 643256 18227829 ~ 18275594 (+)
lama1 LOC106590346 coding downstream 335271 19254640 ~ 19322131 (+)
LOC118938968 NA coding downstream 373261 19292630 ~ 19292772 (+)
LOC110489742 LOC106590345 coding downstream 483398 19402767 ~ 19546571 (+)
LOC110489743 LOC106590344 coding downstream 639684 19559053 ~ 19569524 (+)
epb41l3a LOC106590342 coding downstream 678915 19598284 ~ 19680110 (+)
G1265635 xylb non-coding upstream 82564 18831925 ~ 18836286 (+)
G1265593 NA non-coding upstream 132685 18785951 ~ 18786165 (+)
G1265588 NA non-coding upstream 140582 18778053 ~ 18778268 (+)
G1265559 NA non-coding upstream 175708 18742865 ~ 18743142 (+)
G1265546 NA non-coding upstream 183038 18735579 ~ 18735812 (+)
G1265685 LOC106590348 non-coding downstream 24716 18944085 ~ 18958062 (+)
G1265750 NA non-coding downstream 128735 19048104 ~ 19136006 (+)
G1265790 NA non-coding downstream 192196 19111565 ~ 19112661 (+)
G1265889 NA non-coding downstream 376563 19295932 ~ 19296412 (+)
G1266041 NA non-coding downstream 573428 19492797 ~ 19493656 (+)
mcmdc2 mcmdc2 other upstream 3024686 15885437 ~ 15895996 (+)
G1261980 NA other upstream 3182433 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 3212311 15696896 ~ 15706601 (+)
LOC110489660 pan3 other upstream 3723905 15166247 ~ 15194945 (+)
G1267949 pck2 other downstream 1920926 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 2866852 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 4213490 23132828 ~ 23146739 (+)
G1270643 NA other downstream 4457939 23377308 ~ 23377560 (+)

Expression


Co-expression Network