XLOC_031816 (RAPGEF4)


Basic Information

Item Value
gene id XLOC_031816
gene name RAPGEF4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 6850821 ~ 6922290 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062322
CTGGAAGACAGGACTCCTGACAGCGCTCCCCGGTGGAGATGCAGCATCCGCGGTGACACTGCAGCCTCAGCACCGCAGATCTCCCGCTGACACTACCCTATTTCTCCATCAAGTGGGATTTGATTTCATCGCTCGGTGCATGTGTAGAAACGCGTTACTGCACGCTGTCTGCTGTCGTGCGTGTGTGGACGTGGTGACGATGCGTCCACGCCGCGGCGATCCACGCAGAGGCGGGGAGAGGAGGGGGGTTGAGCCCTGCTGCTGCTGATGCTGATGAAGCGACCAAGTCGACGAGAACCGCGATCCGAGACGCACGATCCAGCACACCGCTTTTAGCCGAAGATGGTAGCGGTGCACGCCTCTGCGCACTCCGTGGCCTCTGCCGAGTGGATCATCTGCCTGGATAAGAGGCCAGCTGAACGCTCGGGAGAAGACGTGGACATCATTCTGGCTCGGCTGAAGGGTGTGAAGGCCTTCGAGAAGTTTCATCCTAACCTGCTGCAGCAGATCTGCATGTGTGGCTTTTATGAGTACCTAGAGAAAGGCATCACCTTGTATCGACAGGGTGACATCGGCACCAGCTGGTACGCCGTTCTGTCTGGATCTCTGGACGTCAAAGTGTCTGAAACAGCCAACCATCAGGATGCTGTAACAATCTGTACTTTGGGAGTGGGAACAGCATTCGGGGAGTCAATTCTGGACAACACTCCTCGACATGCCACGATTGTCAGCCGAGAGAACAGTGAACTTCTGCGCATCGAGCAGAGGGAGTTCAAAACCCTGTGGGAGAAATACAGGCAGTGCATGGCAGGGCTTCTTGCTCCGCCGTATGGAGTGATGGACAGTGGAGCGACTAATGATAGAATGCCGGACAAAGACAATCTCAGCAACGATCCTCTCAATTTTATGTCAAAAAACCTGAATAAGGTGCCGTCAGAAAAGATTTTGAGGGCAGAAAAAGTGTTACGTAATGCAATACTGGCCAGAGCTCCCCACATGATCAGAGACAGAAAATATCATCTGAAAACATACAGgcagTGTTGTGTGGGCACTGAGCTGGTGGACTGGTTGCTTCAGCAGAGCTCATGTGTTCACAGTCGGGCTCATGCTGTGGGAATGTGGCAGGTGCTGCTGGAGGAAGGAGTTCTGAATCACgTCGACCATGAACTCAACTTTCAAGATAAGTACCTCTTTTACCGTTTCCTCGACGATGAGGAGGAGGATGCGGTGTTGCCTAGCGACGATGAGAAACGCGAAGCTGAGGAAGAGCTGCAGGAGACACTCCTCTTCCTCTCTCAGATTGGCCCTGACGCGCACATGCGCATGATCCTCAGGAAACCGCCTGGTCAAAGAACAGCTGAAGACCTGGAGATTATTTATGATGAGCTGCTGCATATCAAAGCTGTCTCTCACCTGTCCAACACTGTGAAGAGAGAGCTCGCCGGTGTCCTCATCTTTGAGTCACACGCCAAAGCAGGCACTGTCTTGTTTAATCAAGGGGAGGAAGGCACTTCTTGGTATATTATCCAGAAAGGATCAGTAAATGTTGTCATCTATGGCAAGggtgtGGTTTGTACGCTGCATGAGGGAGATGATTTTGGCAAACTGGCGCTGGTAAATGACGCCCCCCGCGCCGCTTCCATCGTGCTGAGAGAGGACAACTGCCACTTCCTGAGGGTGGACAAAGAGGACTTCAACCGTATACTCAGGGATGTTGAAGCAAACACGGTGCGTCTAAAAGAGCATGAGCAGGATGTTTTGGTACTACAGAAGAGTCTCCGGCCCTCCAGCCATGGAAACATCCCAGCCCACTTCAAATACACTGTGATGTCAGGCAGCCCTGAGAAGATTCTGGAGCATCTGCTGGAGACAATGCGACTGGACATTCATTTCTCTGACCCAGATCCAGCTCTTGATGACTTTGTGCTCATGCACTGTGTTTTCATGCCCAACAGTCAGCTGTGCCCCGCTCTTCTGGCCCACTATCACTCTCAGGCCTCTCAGGGCTCTGAGCAGGACCGTCTAGACTACGCTGTTGCCAGTAAGAGACGAGTGCTCAGCTTGGCTCTGCGCTGGGCTGCCCTGCAGGCCCACCATCTGCTGGAGGATGACACTGCGCTCGGCTTTCTGGAgGAGCTGCATGGCTTCGTGTCTAATGATGCCAGAGTTTTGCGTCCACTGAAGGAGCTGCTGCCTGAGCTAGAGAAGATCATCAAGCAGTATCCAGATGATGCAAGATCTTCTCAAAAAAAGCATAAAGTCCTCTTGCGGCAGTTCAGCTCTGGAGAGGAGAGACTTGCAAAAAAGCAGCCAATAAGGAGCTTTGATGACATTCTGTTGAAGGTGTACTGCAGTGATCACACATACACCACTATTCGTGTTCCTGTGCTGGCCACGGGGAGAGAGGTGACCGCTGCTGTAGCCGATAAACTGGGATCCACAGAAGAGCTGCTTTTGATCAACCTCAGCGCATCTGGAGAAAAGCAGATTTTAAAGCCCAATGATGTGTCGGTGTTCCAGTCTCTGGGAGTGAACGGACGCATGTTTGTCTGCCCTAGAGAGCTGCTTGATTCACTGAATCCACTTCCAGAGCAGGAGGGTCCGTCCACAGGTTCTATGTCCAGTTTTGAGCTGATGAGCTCTAAAGATCTGGCCTTTCAGATGACCCAGTACGACTGGGAACTTTTCAGCTGCGTACATGAGtatGAGCTGGTGTATCACACATTTGGACGGCAGGCGTACCGACGATCCACAGCCAATCTGGAGCTGTTTCTGCGGCGCTTCAATCAGCTGCAGCTGTGGGTGGTGACGGAGGTCTGTCTCTGCGGGACGCTCAGCAAACGGGTGCAGCTCTTGAAGAAGTTCATCAAGATCGCCGCCCACTGTCGAGAGTTTAAAAATCTGAACTCTTTCTTCGCCATTATCATGGGCATGTGCAACCCAGCTGTGAGCAGACTCATCCAGACATGGGAGaaactgcCTAGTAAATTTAAGAAGTTCTACGCAGAGTTTGAGAGTTTACTAGATCCATCTAGGAATCATCGTGCTTACCGCCTCACTGTGGCCAAGATGGAGCCGCCAATCATTCCCTTTATGCCCCTCCTCATTAAAGACATGACGTTTACCCATGAGGGGAATAAGACTTTTATTGACGGACTGGTGAACTTTGAGAAGATGcGGCTGATTGCTAACACAGTGAGAGCGGTCAGGCATTGCAGGAGCCAGCCTTTCAATGCTGAAGCGTCTCCAGCCAGTAAGAATCCACAGGAAGTGAGGAATTATGTGCGCCAGCTGACTGTGATTGACAACCAGAGAACCCTATCACAGCTGTCCTTCAGACTGGAGCCAAGACGGGGCTAAGGACCAATgctgagtctctctctctctctttctccctctctctctctctctctctctctctctctctctctctttctaaaaTACACCTACTGTATATCCAGTTTACAGCAGTACAACTCAATTTTACGTCTATTGGCTGCCAGAGCTGTTGCCGACTGTATGTGCTATCACTGCCAACTCGACTTTGTGTACAAGATGCATTCTCATACACGAACGGTCAAATTAGATATCAGTAAGgtttttaaaagaagatttaCCTCACcaacactgcatttatttgatccaaaataaagtaaaacatgtGAAATAAGATCACTGTttcaaacagattaaaatgtagattaaaatgtaatttattcctgtgattgaAAGGTGAATTTTTAGCATTATTACTCTGTTAatgaaaaaaatcaatcaatcaatcaacttttTCAATGTACTTTAATGTCTcgtgattcttcagaaatcattttaattatgGATTATAATCAGTACTCAATCTTTTATAATGATTCTTATAAGTATTagtgttaaaaacatttttacagtgctcCATAGTTTTGTggaaatttatatattttacttttaagatTCTTTGATGAAACTggttcacagaaatcagtcaagtttggtgaaggagaaatcatggtttggggttacattcggcatgggggtgtgcgagagatctgcagagtggatggcaacataagcagcctgaggtgtcaagacatttgtgctgcccattacattacaaaccactggagagggcaaattcttcagcaggatagcgctcctcatacttcagcctccacatcaaagatcctgatagcaaagaaggtcaagatgcttcaggattggccagcccagtcaccagacatatgaacattattgagtatgcctggggtaagatgaaataaaaggcattgaagatgaaaccaaaaaatattgatgaactctgggagtcctgcaagaacactttctttgccattccagatgactttattaataagtcatatgagtcattgcagagatgtatggatgcagtcctccaagcttatgggagtcatacacaatattaactcttttcccactgcaccatgactttatattctatactgtacattattcctgttaagtgacaagagttgtgtctaagcaaagtcagacgttACTGCCctagttaaataattaataatcaaggcaaaattatattttattttggtaaaataagcgtaatctagaagcctttacctactatataagccacttctgataccaaatgatcaactagaagtcaagttattatttgctgttcctaaaacttggattggggacaagacttttgtcaggtagtgtatatatatatatatatatatatatatatatatatatatatatatatttttttttttttttttttttttataagtgtcTTCACTTTCACTCTTGAACAATTGAATGTGTCCTAGATTAATAAAAGTAAAGAcatgttaaatattaattttgagTGCTACTTTTGAATTTCTACAAAAATATGAAGCAATCCAACAGATTTTAAcactaacaacaacaataataataataataatagattttttaacaTATTAGAAAAATTTCTGAAGAATGTGACACTGAAGACGGCAGTATTGATGCaaaaaaatctgctttaaatcacaggaataaatgtcGTTTTTAAACTATATTCAATAAGAAAACATGTCTTTTAAATTGCAACAATATTTCCAACGTTGTAAGAGTTTACTCTGTTTTgaatctttttaaaaatgcaacctTGGTGGGCAGGagaattttcttttaaaacagttaaaaatccTACTCATCTCAAACTTTTGACCAATATGTGTGCTTGATTGTGTGAGAGTGTATGCGAGTGGCAAGCCAATGACTTTAGTATTAAGAGCTACCATGTGTGTgcgtatgcatatgtgtgtgcgtatgtaaAATGCAGTCTACTGTACACCCTTTGATTCAGTCATGTGAGGTCATAGTTACAGAAATTCTCATTATTCCCTTATACTGTACTGTAGCCATTGCCTGTGCTTGTTCCTACATTTCTATCATCCCAACGCAAAACAATCCTAAAAATAAGAGTTTAGTACAAGCTACATATCATGCAAACAAATAGTGACTCCGGCCACAGAAAATCAATCATCGATTCTCTCCATAAAACCTTCCAGGCCTCAATGATTTGTGTTACAAGTTTCAAGTCATTCAGTATAAGTATTAGTATTCTGTCTCAAGGACTATTTTTGTTACCACTGGCTCAATTATGTGCTAGTAACTTACCTCTCGCCATAGCCTGTAGCATTATTGATGCCATTTTGTACATTGagttatatttgcatatttttgggTTGGACCCATGTTTTTTTGCTAAGTTATCATAATCGGTCTGAGAAGGCCTTTGTTTGTTCTCATTGTGCCGTTTGGAAAGTGagacgctgtgtgtgtgtgcgtgtgtataagGCACTTATTTTCTTTTAGGAAAATGTCTACGCCTGCCTTGTAAATAAATGTACCGTTGAACACTT
>TCONS_00062323
GTGGAGATGCAGCATCCGCGGTGACACTGCAGCCTCAGCACCGCAGATCTCCCGCTGACACTACCCTATTTCTCCATCAAGTGGGATTTGATTTCATCGCTCGGTGCATGTGTAGAAACGCGTTACTGCACGCTGTCTGCTGTCGTGCGTGTGTGGACGTGGTGACGATGCGTCCACGCCGCGGCGATCCACGCAGAGGCGGGGAGAGGAGGGGGGTTGAGCCCTGCTGCTGCTGATGCTGATGAAGCGACCAAGTCGACGAGAACCGCGATCCGAGACGCACGATCCAGCACACCGCTTTTAGCCGAAGATGGTAGCGGTGCACGCCTCTGCGCACTCCGTGGCCTCTGCCGAGTGGATCATCTGCCTGGATAAGAGGCCAGCTGAACGCTCGGGAGAAGACGTGGACATCATTCTGGCTCGGCTGAAGGGTGTGAAGGCCTTCGAGAAGTTTCATCCTAACCTGCTGCAGCAGATCTGCATGTGTGGCTTTTATGAGTACCTAGAGAAAGGCATCACCTTGTATCGACAGGGTGACATCGGCACCAGCTGGTACGCCGTTCTGTCTGGATCTCTGGACGTCAAAGTGTCTGAAACAGCCAACCATCAGGATGCTGTAACAATCTGTACTTTGGGAGTGGGAACAGCATTCGGGGAGTCAATTCTGGACAACACTCCTCGACATGCCACGATTGTCAGCCGAGAGAACAGTGAACTTCTGCGCATCGAGCAGAGGGAGTTCAAAACCCTGTGGGAGAAATACAGGCAGTGCATGGCAGGGCTTCTTGCTCCGCCGTATGGAGTGATGGACAGTGGAGCGACTAATGATAGAATGCCGGACAAAGACAATCTCAGCAACGATCCTCTCAATTTTATGTCAAAAAACCTGAATAAGGTGCCGTCAGAAAAGATTTTGAGGGCAGAAAAAGTGTTACGTAATGCAATACTGGCCAGAGCTCCCCACATGATCAGAGACAGAAAATATCATCTGAAAACATACAGgcagTGTTGTGTGGGCACTGAGCTGGTGGACTGGTTGCTTCAGCAGAGCTCATGTGTTCACAGTCGGGCTCATGCTGTGGGAATGTGGCAGGTGCTGCTGGAGGAAGGAGTTCTGAATCACgTCGACCATGAACTCAACTTTCAAGATAAGTACCTCTTTTACCGTTTCCTCGACGATGAGGAGGAGGATGCGGTGTTGCCTAGCGACGATGAGAAACGCGAAGCTGAGGAAGAGCTGCAGGAGACACTCCTCTTCCTCTCTCAGATTGGCCCTGACGCGCACATGCGCATGATCCTCAGGAAACCGCCTGGTCAAAGAACAGCTGAAGACCTGGAGATTATTTATGATGAGCTGCTGCATATCAAAGCTGTCTCTCACCTGTCCAACACTGTGAAGAGAGAGCTCGCCGGTGTCCTCATCTTTGAGTCACACGCCAAAGCAGGCACTGTCTTGTTTAATCAAGGGGAGGAAGGCACTTCTTGGTATATTATCCAGAAAGGATCAGTAAATGTTGTCATCTATGGCAAGCCAATGACTTTAGTATTAAGAGCTACCATGTGTGTgcgtatgcatatgtgtgtgcgtatgtaaAATGCAGTCTACTGTACACCCTTTGATTCAGTCATGTGAGGTCATAGTTACAGAAATTCTCATTATTCCCTTATACTGTACTGTAGCCATTGCCTGTGCTTGTTCCTACATTTCTATCATCCCAACGCAAAACAATCCTAAAAATAAGAGTTTAGTACAAGCTACATATCATGCAAACAAATAGTGACTCCGGCCACAGAAAATCAATCATCGATTCTCTCCATAAAACCTTCCAGGCCTCAATGATTTGTGTTACAAGTTTCAAGTCATTCAGTATAAGTATTAGTATTCTGTCTCAAGGACTATTTTTGTTACCACTGGCTCAATTATGTGCTAGTAACTTACCTCTCGCCATAGCCTGTAGCATTATTGATGCCATTTTGTACATTGagttatatttgcatatttttgggTTGGACCCATGTTTTTTTGCTAAGTTATCATAATCGGTCTGAGAAGGCCTTTGTTTGTTCTCATTGTGCCGTTTGGAAAGTGagacgctgtgtgtgtgtgcgtgtgtataagGCACTTATTTTCTTTTAGGAAAATGTCTACGCCTGCCTTGTAAATAAATGTACCGTTGAACACTT
>TCONS_00062325
GCGGCGCTCAGCATTTTCACTACATCTCTTTCAGTGTAATGTGAAGGCAGTTCACCTGTGATGACTCAGCAGAATTTTTATCTGAAATAAATCTTTGCTTTGCAGAAATACAGGCAGTGCATGGCAGGGCTTCTTGCTCCGCCGTATGGAGTGATGGACAGTGGAGCGACTAATGATAGAATGCCGGACAAAGACAATCTCAGCAACGATCCTCTCAATTTTATGTCAAAAAACCTGAATAAGGTGCCGTCAGAAAAGATTTTGAGGGCAGAAAAAGTGTTACGTAATGCAATACTGGCCAGAGCTCCCCACATGATCAGAGACAGAAAATATCATCTGAAAACATACAGgcagTGTTGTGTGGGCACTGAGCTGGTGGACTGGTTGCTTCAGCAGAGCTCATGTGTTCACAGTCGGGCTCATGCTGTGGGAATGTGGCAGGTGCTGCTGGAGGAAGGAGTTCTGAATCACgTCGACCATGAACTCAACTTTCAAGATAAGTACCTCTTTTACCGTTTCCTCGACGATGAGGAG

Function

symbol description
rapgef4 Enables guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of neurotransmitter receptor localization to postsynaptic specialization membrane and regulation of postsynapse organization. Predicted to act upstream of or within adenylate cyclase-activating G protein-coupled receptor signaling pathway; regulation of exocytosis; and secretion by cell. Predicted to be located in plasma membrane. Predicted to be active in glutamatergic synapse; hippocampal mossy fiber to CA3 synapse; and postsynaptic density. Implicated in autistic disorder.

GO: NA

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04072 Phospholipase D signaling pathway
ko04024 cAMP signaling pathway
ko04670 Leukocyte transendothelial migration
ko04911 Insulin secretion
ko04261 Adrenergic signaling in cardiomyocytes
ko04131 Membrane trafficking

Ensembl:

ensembl_id ENSDARG00000075924

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062322 False 5912 mRNA 0.44 30 6850821 6922290
TCONS_00062323 False 2184 mRNA 0.48 13 6850853 6922290
TCONS_00062325 True 534 lncRNA 0.46 5 6894228 6900683

Neighbor

gene id symbol gene type direction distance location
XLOC_031815 RIN2 coding upstream 4828 6822592 ~ 6845993 (+)
XLOC_031814 dtd1 coding upstream 41223 6802142 ~ 6809598 (+)
XLOC_031813 si:ch211-85n16.3 coding upstream 50434 6797520 ~ 6800387 (+)
XLOC_031812 sec23b coding upstream 54134 6779114 ~ 6796687 (+)
XLOC_031811 NA coding upstream 109413 6718916 ~ 6741408 (+)
XLOC_031818 zak coding downstream 2347 6924637 ~ 6967588 (+)
XLOC_031819 GPR161 coding downstream 201690 7123980 ~ 7133531 (+)
XLOC_031820 NA coding downstream 285303 7207593 ~ 7208629 (+)
XLOC_031821 si:ch211-181l5.2 coding downstream 318113 7240403 ~ 7245216 (+)
XLOC_031822 dzip1 coding downstream 327241 7249531 ~ 7280299 (+)
XLOC_031807 BX324134.2 non-coding upstream 634911 6215794 ~ 6215910 (+)
XLOC_031805 NA non-coding upstream 764689 6085236 ~ 6086132 (+)
XLOC_031804 NA non-coding upstream 868963 5938465 ~ 5981858 (+)
XLOC_031803 CU074421.2 non-coding upstream 1166526 5684181 ~ 5684295 (+)
XLOC_031826 AL953886.2 non-coding downstream 507021 7429311 ~ 7435700 (+)
XLOC_031828 AL953886.1 non-coding downstream 531065 7453355 ~ 7453831 (+)
XLOC_031837 NA non-coding downstream 1342474 8264764 ~ 8271403 (+)
XLOC_031839 NA non-coding downstream 1416981 8339271 ~ 8346941 (+)

Expression


Co-expression Network