G1266158 (LOC106590335)


Basic Information

Item Value
gene id G1266158
gene name LOC106590335
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19778700 ~ 19778951 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1446614
CTTTCTGTGACTCCAGGCAGGATGAAGAACATCCAGAAGTGGATACCGAACACCAGGATGACCTGGAAGATGACTTTTCCCATGACAGTCTTGCGGAGGTAGAGGGCTCGGTCGATGATCATGGTGCCAAACTGGATCAGTACCATCACCAGGAAGGCCTCGGGAACCTGGTCCTCCGACAGGGAGGAAGTGATGTCAGCTGCGGCAGAGTGTTTCTATGAGAGACAGGAAGTCATGTTATTCATTTGGAAG

Function

NR:

description
PREDICTED: piezo-type mechanosensitive ion channel component 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1446614 True 252 lncRNA 0.52 1 19778700 19778951

Neighbor

gene id symbol gene type direction distance location
LOC110489750 LOC106590336 coding upstream 5302 19768953 ~ 19773398 (+)
LOC110489748 LOC106590337 coding upstream 28594 19726580 ~ 19750106 (+)
LOC110489746 LOC106590339 coding upstream 63856 19708869 ~ 19714844 (+)
LOC110490938 NA coding upstream 76958 19695171 ~ 19701742 (+)
zbtb14 LOC106590341 coding upstream 86078 19684897 ~ 19692622 (+)
LOC110490828 LOC101268971 coding downstream 273678 20052629 ~ 20055980 (+)
gcm2 LOC106590332 coding downstream 309825 20088776 ~ 20093865 (+)
mak mak coding downstream 353806 20132757 ~ 20146308 (+)
tfap2a tfap2a coding downstream 373406 20152357 ~ 20165444 (+)
ofcc1 ofcc1 coding downstream 529696 20308647 ~ 20420757 (+)
G1266161 NA non-coding upstream 1020 19777471 ~ 19777680 (+)
G1266159 NA non-coding upstream 3740 19774155 ~ 19774960 (+)
G1266156 NA non-coding upstream 10086 19767307 ~ 19768614 (+)
G1266151 NA non-coding upstream 16269 19760138 ~ 19762431 (+)
G1266153 NA non-coding upstream 22855 19755176 ~ 19755845 (+)
G1266163 NA non-coding downstream 2120 19781071 ~ 19781416 (+)
G1266164 LOC106590335 non-coding downstream 2534 19781485 ~ 19781805 (+)
G1266165 LOC106590335 non-coding downstream 3502 19782453 ~ 19782715 (+)
G1266166 LOC106590335 non-coding downstream 3955 19782906 ~ 19783421 (+)
G1266168 NA non-coding downstream 5521 19784472 ~ 19784760 (+)
epb41l3a LOC106590342 other upstream 98595 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 916189 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 3884536 15885437 ~ 15895996 (+)
G1261980 NA other upstream 4042283 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 4072161 15696896 ~ 15706601 (+)
G1267949 pck2 other downstream 1061344 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 2007270 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 3353908 23132828 ~ 23146739 (+)
G1270643 NA other downstream 3598357 23377308 ~ 23377560 (+)
G1270652 NA other downstream 3627709 23406660 ~ 23408002 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G210864 NA non-coding NC_048566.1 CM023220.2 99366089 ~ 99366339 (+)
tiger barb (Puntius tetrazona) LOC122329480 piezo2,LOC107566915,LOC107734312,LOC107655677 non-coding NC_056722.1 CM032091.1 7051417 ~ 7057275 (-)