G1266165 (LOC106590335)


Basic Information

Item Value
gene id G1266165
gene name LOC106590335
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19782453 ~ 19782715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1446621
ACCTCGGTGTAGACGATGGCGGTCATCCAGAAGCGTTTGCTGGGCCTTGGGACAGACAGCATGGCCCAGAGGAAGATGAGGATGGGCAGAACGAGCGTGGCCACGGACGCTGAGATCATGTGGTTGAGGATGATGACCAGGAAACACACCATCTCTGAGTGGGCCACCAGCATGTTGTAGAGAGCATAGAGCAGCTGGAGCAGCGCCGGCTGGTTGCCGTAGAAACGCTCAGAGTCTTCCAGCTCCTCGTCGTAGAACatcct

Function

NR:

description
piezo-type mechanosensitive ion channel component 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1446621 True 263 lncRNA 0.57 1 19782453 19782715

Neighbor

gene id symbol gene type direction distance location
LOC110489750 LOC106590336 coding upstream 9055 19768953 ~ 19773398 (+)
LOC110489748 LOC106590337 coding upstream 32347 19726580 ~ 19750106 (+)
LOC110489746 LOC106590339 coding upstream 67609 19708869 ~ 19714844 (+)
LOC110490938 NA coding upstream 80711 19695171 ~ 19701742 (+)
zbtb14 LOC106590341 coding upstream 89831 19684897 ~ 19692622 (+)
LOC110490828 LOC101268971 coding downstream 269914 20052629 ~ 20055980 (+)
gcm2 LOC106590332 coding downstream 306061 20088776 ~ 20093865 (+)
mak mak coding downstream 350042 20132757 ~ 20146308 (+)
tfap2a tfap2a coding downstream 369642 20152357 ~ 20165444 (+)
ofcc1 ofcc1 coding downstream 525932 20308647 ~ 20420757 (+)
G1266164 LOC106590335 non-coding upstream 648 19781485 ~ 19781805 (+)
G1266163 NA non-coding upstream 1037 19781071 ~ 19781416 (+)
G1266158 LOC106590335 non-coding upstream 3502 19778700 ~ 19778951 (+)
G1266161 NA non-coding upstream 4773 19777471 ~ 19777680 (+)
G1266159 NA non-coding upstream 7493 19774155 ~ 19774960 (+)
G1266166 LOC106590335 non-coding downstream 191 19782906 ~ 19783421 (+)
G1266168 NA non-coding downstream 1757 19784472 ~ 19784760 (+)
G1266179 NA non-coding downstream 18264 19800979 ~ 19802097 (+)
G1266183 NA non-coding downstream 21842 19804557 ~ 19804828 (+)
G1266189 LOC106590335 non-coding downstream 28900 19811615 ~ 19811955 (+)
epb41l3a LOC106590342 other upstream 102348 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 919942 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 3888289 15885437 ~ 15895996 (+)
G1261980 NA other upstream 4046036 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 4075914 15696896 ~ 15706601 (+)
G1267949 pck2 other downstream 1057580 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 2003506 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 3350144 23132828 ~ 23146739 (+)
G1270643 NA other downstream 3594593 23377308 ~ 23377560 (+)
G1270652 NA other downstream 3623945 23406660 ~ 23408002 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G105656 NA non-coding NC_048566.1 CM023220.2 2148898 ~ 2149330 (-)
mexican tetra (Astyanax mexicanus) LOC111193319 piezo2,LOC108431241,LOC108271803,LOC107734312 non-coding NC_035906.1 CM008309.1 6007095 ~ 6015307 (+)