G1266189 (LOC106590335)


Basic Information

Item Value
gene id G1266189
gene name LOC106590335
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19811615 ~ 19811955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1446647
GTGGGCATGGATGACCCTGATGTCCAATAgcacctcctcttctctctggctctccttcctctctgtcaacGCCTGTCTCAGCAGCAGCCAGAAACTCAGCAGACACAGCATCTTGGAGCCCAGTTCCCGGAAGGGCACCTCTTTCTTTAAGAAGAGCCCAGGCACGGGGTGGAGGATCTCGAAGCTCCAGATGTACTGGAGGATGATCAACAGGTTCCCATAGAACACCATGAAGGGGGACGTGATCATGGCGTACTTGCGTCGGTCACGCACCATCCACAGAGTGCACGACCAGATGAGGAACACAAAGGTCAGCCAACTCACATAGGTGATACTCCACg

Function

NR:

description
piezo-type mechanosensitive ion channel component 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1446647 True 341 lncRNA 0.55 1 19811615 19811955

Neighbor

gene id symbol gene type direction distance location
LOC110489750 LOC106590336 coding upstream 38217 19768953 ~ 19773398 (+)
LOC110489748 LOC106590337 coding upstream 61509 19726580 ~ 19750106 (+)
LOC110489746 LOC106590339 coding upstream 96771 19708869 ~ 19714844 (+)
LOC110490938 NA coding upstream 109873 19695171 ~ 19701742 (+)
zbtb14 LOC106590341 coding upstream 118993 19684897 ~ 19692622 (+)
LOC110490828 LOC101268971 coding downstream 240674 20052629 ~ 20055980 (+)
gcm2 LOC106590332 coding downstream 276821 20088776 ~ 20093865 (+)
mak mak coding downstream 320802 20132757 ~ 20146308 (+)
tfap2a tfap2a coding downstream 340402 20152357 ~ 20165444 (+)
ofcc1 ofcc1 coding downstream 496692 20308647 ~ 20420757 (+)
G1266183 NA non-coding upstream 6787 19804557 ~ 19804828 (+)
G1266179 NA non-coding upstream 9518 19800979 ~ 19802097 (+)
G1266168 NA non-coding upstream 26855 19784472 ~ 19784760 (+)
G1266166 LOC106590335 non-coding upstream 28194 19782906 ~ 19783421 (+)
G1266165 LOC106590335 non-coding upstream 28900 19782453 ~ 19782715 (+)
G1266192 NA non-coding downstream 4156 19816111 ~ 19818869 (+)
G1266195 NA non-coding downstream 11046 19823001 ~ 19823649 (+)
G1266199 LOC106590335 non-coding downstream 18128 19830083 ~ 19830327 (+)
G1266207 NA non-coding downstream 26168 19838123 ~ 19838415 (+)
G1266208 NA non-coding downstream 28422 19840377 ~ 19918111 (+)
epb41l3a LOC106590342 other upstream 131510 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 949104 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 3917451 15885437 ~ 15895996 (+)
G1261980 NA other upstream 4075198 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 4105076 15696896 ~ 15706601 (+)
G1267949 pck2 other downstream 1028340 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 1974266 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 3320904 23132828 ~ 23146739 (+)
G1270643 NA other downstream 3565353 23377308 ~ 23377560 (+)
G1270652 NA other downstream 3594705 23406660 ~ 23408002 (+)

Expression


Co-expression Network