G1268555 (LOC106590243)


Basic Information

Item Value
gene id G1268555
gene name LOC106590243
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20958372 ~ 20960089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1449275
GAgctataaaatattttttattcaaaAATGTTTGAATTGCACAATGACATAACTTTTGCCTGATATCTAACATTTCTTGTTAACTGCCTTATTCTTAGTGGTGCTTAATTCAATGAATCTTTTTGAAACCATAAAAGTTATTGGGTAATCAGATTGGGTAATCATTCTTGCCATGTCATTTCAGAGAAAAGGTAGAGGAGGTAGAAAGTGTGCTGAAATCTGTGTCATCTAACCAAagacaaaatacttttaaagtaCTTGGAACTTTGTGTTCTTTGACTCACAGCCTTTGTTGACTTAGGCACTAACCCTGCATTATATCAACATTTGGGATACTCCCAGATGAAAGCACTTACGTGACTGTTTTATAACAATGTACAATTTCCACCAATGTAACAAAAGAGCATATTTTCATACAGAACCACACATAGTTGCTGTCATTCTCTACAACATTCCCCAACACACTCAACAGCCCTCTTCCCTGGCTGCATTCTCACCCCTGGGCTGTAGGTGACGCTGTGACAagatgtgtttgagagtgtcCAATTCATGTGTGAGTTGCCCTATGAGAATCTGCAGCCGGTGGTTCTCCTCATGCAGCTGCAGAGCCCTTTGGTGGGTGAGCTGTATGCGCCGCCTGGCCTTGTCTCGGCTCTTCCTCACGGCAATATTGTTCCTCTCCCGCCGCAGTCGATACTCCATGGTGTCCTTGGTCAGGCCCCTCTTCTGCAGGGGGCTTCGCAGGGGGccgggaggaagggggaggaggaagggagaaaaatcCTGTTGCAGTATGTGACTCTGTTGGCCGACATTCTCTGTGGAaggtgtgttgtgacaaggtgcgTAGGACAGGTATGACAATCCCATCATCTGCTCTGTCATTCTGTTACTGCCCGTCCTGACCAATCCCTGAGCCCCCATCGACTGGCTGTATGGAATCCCATCCATCTGAGTCATATCATTGGTAAAGGGTGCCGGGGTCGATGGGTCAGGGTTCAAGGCCACGGTTGTAGAAGCGTGGGTGGGAGTCTGACCGAAGGTTGTGAATGTGGCAGAAACTGGAGGGCTATACTCTTGAATCACAGAACACTGAGACATCTCTGAATTTGTTTATCGTCGTACTGCCTTTTCTATTTTGTGAGTTCCTCCCTCAATGTTCTGCTCATAAACACTGTAAAGACAGGTACTCATCTGATTATCACACCATCACTTCCTCTAAGTTAaacacctcctctctctcgctctcgcgctctctctctctctcatcacccatgGGCT

Function

NR:

description
CCAAT/enhancer-binding protein epsilon-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1449275 True 1281 TUCP 0.46 3 20958372 20960089

Neighbor

gene id symbol gene type direction distance location
ngdn ngdn coding downstream 3565 20948900 ~ 20954807 (-)
thtpa NA coding downstream 51896 20904229 ~ 20906476 (-)
dcaf11 dcaf11 coding downstream 56416 20884973 ~ 20901956 (-)
LOC110490944 NA coding downstream 77986 20879486 ~ 20880386 (-)
LOC110489769 pck2 coding downstream 94057 20840203 ~ 20864315 (-)
LOC110489780 NA coding upstream 42029 21002118 ~ 21007272 (-)
LOC110489781 NA coding upstream 58720 21018809 ~ 21037502 (-)
LOC110489787 LOC106579666 coding upstream 214504 21174593 ~ 21296726 (-)
kcnh2b LOC106590277 coding upstream 352130 21312219 ~ 21614730 (-)
scospondin sspo coding upstream 657330 21617419 ~ 21680364 (-)
G1268570 NA non-coding downstream 76572 20881451 ~ 20881800 (-)
G1268568 NA non-coding downstream 83791 20874361 ~ 20874581 (-)
G1268516 NA non-coding downstream 183139 20774320 ~ 20775233 (-)
G1268462 NA non-coding downstream 296091 20662074 ~ 20662281 (-)
G1268461 NA non-coding downstream 296580 20661561 ~ 20661792 (-)
G1268604 NA non-coding upstream 2000 20962089 ~ 20962325 (-)
G1268610 NA non-coding upstream 11247 20971336 ~ 20971643 (-)
G1268618 LOC106579614 non-coding upstream 21691 20981780 ~ 20986678 (-)
G1268763 NA non-coding upstream 267815 21227904 ~ 21228745 (-)
G1268764 NA non-coding upstream 274388 21234477 ~ 21234903 (-)
G1267452 NA other downstream 667699 20290350 ~ 20290673 (-)
G1267414 NA other downstream 689884 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 1504602 19435018 ~ 19453770 (-)
G1266471 NA other downstream 1849015 19108559 ~ 19109357 (-)
G1265456 LOC106590371 other downstream 2378209 18576539 ~ 18580163 (-)
G1269265 NA other upstream 842598 21802687 ~ 21803352 (-)
G1271421 NA other upstream 2753266 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 5086159 26046058 ~ 26048599 (-)
G1275015 NA other upstream 5551436 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 5594879 26554968 ~ 26562033 (-)

Expression


Co-expression Network