G1267986


Basic Information

Item Value
gene id G1267986
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20969282 ~ 20969935 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1448615
agagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatggggatggaaacatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtccgtgtaaaggaaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgatcctaacacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctaaccagtctccagatctcaaccccatagagaatctttggagggagttgaaagtctgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaaca
>TU1448616
agagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatggggatggaaacatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtccgtgtaaaggaaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgatcctaacacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctaaccagtctccagatctcaaccccatagagaatctttggagggagttgaaagtctgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaacactgtttgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatataacaaagtattgagataaacttttgttattgaccaaatacttattttccac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1448615 False 535 lncRNA 0.47 1 20969282 20969816
TU1448616 True 654 lncRNA 0.44 1 20969282 20969935

Neighbor

gene id symbol gene type direction distance location
cebp1 LOC106590243 coding upstream 9199 20958415 ~ 20960083 (+)
pabpn1 LOC106579615 coding upstream 25593 20927320 ~ 20943689 (+)
zfhx2 zfhx2 coding upstream 49019 20906870 ~ 20920263 (+)
LOC110489770 psme1 coding upstream 90049 20874867 ~ 20879233 (+)
LOC110490943 LOC106590259 coding upstream 153772 20812409 ~ 20815510 (+)
slc22a17 slc22a17 coding downstream 1869 20971804 ~ 20983450 (+)
LOC100136149 LOC100136486 coding downstream 60722 21030657 ~ 21046564 (+)
LOC110489782 LOC106590268 coding downstream 85723 21055658 ~ 21074100 (+)
LOC110490945 LOC106589989 coding downstream 114455 21084390 ~ 21092435 (+)
LOC110489785 LOC106590267 coding downstream 137839 21107774 ~ 21130305 (+)
G1267965 NA non-coding upstream 64763 20904265 ~ 20904519 (+)
G1267962 NA non-coding upstream 66575 20902493 ~ 20902707 (+)
LOC110490942 NA non-coding upstream 164520 20801241 ~ 20804982 (+)
G1267867 NA non-coding upstream 190784 20777986 ~ 20778498 (+)
G1267877 NA non-coding upstream 228442 20738895 ~ 20740840 (+)
G1268075 NA non-coding downstream 202027 21171962 ~ 21172222 (+)
G1268081 NA non-coding downstream 285326 21255261 ~ 21257850 (+)
G1268151 NA non-coding downstream 317696 21287631 ~ 21289238 (+)
G1268178 NA non-coding downstream 361141 21331076 ~ 21331425 (+)
G1267949 pck2 other upstream 127884 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 1289177 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 2106771 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 5075118 15885437 ~ 15895996 (+)
G1261980 NA other upstream 5232865 15735930 ~ 15736417 (+)
slc12a7b LOC106590280 other downstream 816286 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 2162924 23132828 ~ 23146739 (+)
G1270643 NA other downstream 2407373 23377308 ~ 23377560 (+)
G1270652 NA other downstream 2436725 23406660 ~ 23408002 (+)
G1270669 psme2 other downstream 2475903 23445838 ~ 23451494 (+)

Expression


Co-expression Network