G1268618 (LOC106579614)


Basic Information

Item Value
gene id G1268618
gene name LOC106579614
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20981780 ~ 20986678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1449369
tttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtagatccaGTGAAAGTCACTATACATGATCTACCATTAACTTCTATTGGGTACAACATAATctgaaaacacaaccaaaacaaactgcaaatgcatccaacaagtttgtataGTTACCAGCTCGGTGTATTCATTGCGTGCTACAAATATGGGGtcaaatactacacttttgacgaaatgtaatacactataagttaatttgtccaaatacttatgacaccttcatatgggggggggggactagtttgcatttctaaacggtaaaacagaCATGTATGAAAATAACCTTAAATAAAAGTTGACATTATCTACTgtcgcctcatatgaaacatttgatctcaaaatgctggagtatagagccaaattaaaagttttagcttcactgtctaaATAAACACATAGGGGAGTGTAAAGGTGTGTCCATCCATTCTCTACCATACATGTCTATTTACACAAGGTTTTCAGATTTGAATGCACAGACACTCTTTCTAtcatctcttcctgtcttcagAGGAGCCTACAGTAAGGTGGGTCTGAGAGCCTAGACAAGACCATCAAGATTAATGACCCATAAACAGTATTGGCTCCAGGCCACATCTGAAAATGTAATTCATATAATTTTATCACATCCAATCAAGTTTGAGGTACTACAGTAATTTTCTCTCTTTTTTATCAACTGATTGTAGGAGGGCGCCTATTACTATTTATTTGATGCAAGTTCACAAAGCTTCCTCAAACAACCCTCAATTATAACGTAACTCAATTCATCTTCAATCAATCCATGTTATTTTCCCCATTGCCTTTAAGAGCAGTAGACAGATGTGCTCTATCAACTTGGCTAAGTGCCAAGCACAGTACAAAAGCATTCTTCCAAGATCCAGCACTATGTAACAAAACTCCTACTGTTTTTTATCAACAGATAAGCCAGCATTCATTAAGTTAAAGAAACTAGGTTTATGGTAtttacaggacagtagatctgcCTCTGTGAGCTGTGTGTGATGCCATGCTCTGTCAGATCATACACATCAAAGGTGGGCGTTCTGGAGCATGAGCACGAAGCAGCTGATGCCGTTCCGTGACACACAGGCCTTATAGGAAAGGTAGGGGGGACAGGTCACTGCATGACGAGCACTCTCCACACCGCCATCCGACCGGGGCCACACATACGCGTGCGCATACACACAttcacgtacatacacacacactcacttcatTGGCAGAAATGGAGACAGACGAACGACGCATGGCCGCCCCACCCACACTCCTGTGTTAGGAATGACTAGAAAATGATATGTTAGGAAGAGTAGATTGTGTGGTTGATTCTACCATGTCCCTTCACTGGCTCTACACAACCATCTTAACCAGACAACACTTCTCCCTCTTCATTTTTACCCATCTTCCTTTCTGCAGCATGGACCTGGTGACACTCTGGGCTGGCGTTATGACTGAAGTGTGATGTTTGGGCGGCTAGGTCTCTGGGTTGGGGGTGGCCAGCAGGGGAACGTTGTCCCTCCTCCTCCGGCCCAGCGGGGGGCGTCGGTACTGCTCCCCATCGGCCAGTGTCTGGGGCAGTGGTTTCCTCTTGCTCTCAGGCAGCAGCAGGATGGAGAGCACGGCCAGCAGGGCCAGGGTGGAGTACACCACGTGGTGCAGGAAGTAGCCATAGTGGTTGCGTAGGTCCATGAGGGGCGAGGTGAGGCGGCCCACGCAGCCCAGGGC

Function

NR:

description
Solute carrier family 22 member 17

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1449369 True 1788 lncRNA 0.45 2 20981780 20986678

Neighbor

gene id symbol gene type direction distance location
ngdn ngdn coding downstream 26973 20948900 ~ 20954807 (-)
thtpa NA coding downstream 75304 20904229 ~ 20906476 (-)
dcaf11 dcaf11 coding downstream 79824 20884973 ~ 20901956 (-)
LOC110490944 NA coding downstream 101394 20879486 ~ 20880386 (-)
LOC110489769 pck2 coding downstream 117465 20840203 ~ 20864315 (-)
LOC110489780 NA coding upstream 15440 21002118 ~ 21007272 (-)
LOC110489781 NA coding upstream 32131 21018809 ~ 21037502 (-)
LOC110489787 LOC106579666 coding upstream 187915 21174593 ~ 21296726 (-)
kcnh2b LOC106590277 coding upstream 325541 21312219 ~ 21614730 (-)
scospondin sspo coding upstream 630741 21617419 ~ 21680364 (-)
G1268610 NA non-coding downstream 10137 20971336 ~ 20971643 (-)
G1268604 NA non-coding downstream 19455 20962089 ~ 20962325 (-)
G1268570 NA non-coding downstream 99980 20881451 ~ 20881800 (-)
G1268568 NA non-coding downstream 107199 20874361 ~ 20874581 (-)
G1268516 NA non-coding downstream 206547 20774320 ~ 20775233 (-)
G1268763 NA non-coding upstream 241226 21227904 ~ 21228745 (-)
G1268764 NA non-coding upstream 247799 21234477 ~ 21234903 (-)
G1268771 NA non-coding upstream 259195 21245873 ~ 21246537 (-)
G1268772 NA non-coding upstream 261339 21248017 ~ 21249031 (-)
G1268555 LOC106590243 other downstream 21691 20958372 ~ 20960089 (-)
G1267452 NA other downstream 691107 20290350 ~ 20290673 (-)
G1267414 NA other downstream 713292 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 1528010 19435018 ~ 19453770 (-)
G1266471 NA other downstream 1872423 19108559 ~ 19109357 (-)
G1269265 NA other upstream 816009 21802687 ~ 21803352 (-)
G1271421 NA other upstream 2726677 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 5059570 26046058 ~ 26048599 (-)
G1275015 NA other upstream 5524847 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 5568290 26554968 ~ 26562033 (-)

Expression


Co-expression Network