G1268081


Basic Information

Item Value
gene id G1268081
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21255261 ~ 21257850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1448744
GGTTGTGGAAGAATTTATTAGCACAATgtgcagacagatggacagactaCGACGGGCGGACAGTCTAGAAAACGAGCGCTGTACACAGATGTGCTATCcagcagaggaggagggggaggcttGATATCAACCACACGAAGAGTCGTCAAAATCAAGGGGACGACTTTCTCAGAACAGCAAAGCCATAGGGGAAAAGAGGTTGGTAAACCTCGCAAATATGTTTAAGTCATCCTTAACTTTCACTTGACTTACTTTAAACTGAACTGAAACAAAAGACAAGATGAATGAGAAAGCGTGCAAACTTTCACGTCGAGTGGCATGTGTTAAAAAGTAGTGTGTTAGAGAGAAATGTGACTTTCAGAAACAGCCCAGACTTTTAGGACAGAGACAACCTGACATCGGAGATAGAAGCAGTGTGAGTTTGGTGTTAGGAGAGCAGGCTGGCAGAGCTGTCCCAGTAAGAGACAAGGTGCTGACGGGAGGAGAGCGGCTGGCAGTGGTACTgtgggtcaaatcaaatcaaagtttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagatgaaCTTGTCAACTGAAGCATAATAAAACATCACCAAGAAAGTGAGTGacacaaggaagagagagagagaaagagagggagagcgagagaattgaaagagagagagagggagaacgagataattgaaagagagagggagagaattgaACGAGAGAGATTGCTACATTGTAAATTGGGTCGAGAAACTTTGTGGAAGGGTGAGTATGTAAACTACACGTATGAATAAATAAGGAGTGTGGGTGAGTATGTAAACTACACGTATGAATACATAAGGAGTGTGGGTGAGTATGTAAACTACACGTATGAATAAATAAGGAGTGTGGGTGAGTATGTAAACTACACGTATGAATAAATAAGGAGTGTGGGTGAGTATGTAAACTACACGTATGAATAAATAAGGAGTGTGGGTGAGTATGTAAACTACACGTATGAATAAATAAGGAGTGTGGGTGAGTATGTAAACTACACGTATGAATAAATAAGGAGTGTGGGTGAGTATGTAAACTACACGTATGAATAAATAAGGAGTGTGGGTGAGTATGTAAACTACACGTATGAATAAATAAGGAGTGTGGGTGAGTATGTAAACTACACGCATGAATAAATAAGGAGTGTGGGTGAGTATGTAAACTACACGTATGAATAAATAAGAAGTGTGGGTGCGTTGAAGAGTAATCCTGGCGTGCCCATGTGTGTGCAATATATTACAATTACTAGTAGtatgcatcactgcctggaacAATATGTAAAAAAGCCCAAGGGGCCATATGGGATATGAGAAGAGGACAGGGTGACAGACAGGCGTGTTTGTGACGGTACTCCGTCATCATGACCAGCCATATTAACAGTACTCTCACCTATAACACTCGTCTAGGGCCCTAGAAAATGTGCGATGTGGGAGGACGTGGACAGAATCACGGAATCCAGCTGTTAAAGcggaattcaacaatattctACAATGTCTTGGACTTAATAGGGGATCgactaaatgtactgaaaatgTATTCATTTGCTCAAGTTCATCATGACACGAacagaatgcatcagtgattcgtatatttcctgcaactttctgCGGAGGCAACGAAAACTCCTCGTCTGTGGATGAGCGGTGCGTGTGGCTACCACTTTGTGTGGccttagcgatgatgctaatgaaaaccttctggtagatggaaagacTCCCAACACCCTTCTCGTtgaaatgttaactacaaagtagaCTGTGCTtgcctggcagaatgatatcatgattatttgcatcattcaagtgttttttgttttgactgctaaacaacagcctgttgctagttGCACACTAGAATTAAAGGGGTAATTACACCCAAAAATCGAGATTTCTAAATTtgcccagacctcaaaagtggtctcctgatgtggtttaaacaTTCTTGTTAAAACATGGACTTAAAACATCCAATTCAGttgtttttctatttaaaaaagTGTGATTTGAAATCGAAAacatgaaagaaagaaaaataggGGGAAATggaaacctggaaaaacaaaatggagaaaaatcagacaacaaacaaaaaatgtataGGACCCTACTCATACTCTGGTTGGAGTGTAGAGTATTTCaaagcatctgtgtgtgtgtgtgtgtgtgttcattgtgTGTATGAGTCTGTACCTGCATAGctactgtgtgcttgtgtgcttgATAATCTGTGTAGGTGAAGGCTTATTTCTGCTCATTTAGTCCTCTAGGctcagagtaggagagagagtagaCTTGTGCTGGCGGCAGTGGAGAACCCTAACCCCCATATTCTGATGGAAGGCTGGCGAGAGTCAGGAGAGGCTCCACAATGTTTCCTACAGAGGTCTCCAGGCTGATGGGCAttgcggtggtggtggtgtggttgttataggggggggggggggggggggggggtactgaggtgggagaggagaggtgtagagAAGCAGAAGCACTGGTGACACTCAGGCGGTGGCTTGT

Function

NR:

description
PREDICTED: neuronal PAS domain-containing protein 4-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1448744 True 2552 lncRNA 0.43 2 21255261 21257850

Neighbor

gene id symbol gene type direction distance location
LOC110489784 LOC106590267 coding upstream 93446 21145517 ~ 21161815 (+)
LOC110489785 LOC106590267 coding upstream 124956 21107774 ~ 21130305 (+)
LOC110490945 LOC106589989 coding upstream 162826 21084390 ~ 21092435 (+)
LOC110489782 LOC106590268 coding upstream 181161 21055658 ~ 21074100 (+)
LOC100136149 LOC100136486 coding upstream 208697 21030657 ~ 21046564 (+)
LOC110489799 NA coding downstream 390287 21648137 ~ 21649966 (+)
aoc1 LOC106590278 coding downstream 449886 21707736 ~ 21713134 (+)
slc12a7b LOC106590280 coding downstream 471905 21729755 ~ 21794253 (+)
si:ch211-276f18.2 gfod1 coding downstream 546302 21804152 ~ 21844069 (+)
LOC110489791 LOC106590282 coding downstream 651782 21909632 ~ 21991990 (+)
G1268075 NA non-coding upstream 83039 21171962 ~ 21172222 (+)
slc22a17 slc22a17 non-coding upstream 281927 20971804 ~ 20983450 (+)
G1267986 NA non-coding upstream 285326 20969282 ~ 20969935 (+)
G1267965 NA non-coding upstream 350742 20904265 ~ 20904519 (+)
G1267962 NA non-coding upstream 352554 20902493 ~ 20902707 (+)
G1268151 NA non-coding downstream 29781 21287631 ~ 21289238 (+)
G1268178 NA non-coding downstream 73226 21331076 ~ 21331425 (+)
G1268212 NA non-coding downstream 117036 21374886 ~ 21376176 (+)
G1268338 NA non-coding downstream 291995 21549845 ~ 21550143 (+)
G1268352 NA non-coding downstream 317820 21575670 ~ 21575875 (+)
G1267949 pck2 other upstream 413863 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 1575156 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 2392750 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 5361097 15885437 ~ 15895996 (+)
G1261980 NA other upstream 5518844 15735930 ~ 15736417 (+)
LOC110489812 rdh12 other downstream 1875009 23132828 ~ 23146739 (+)
G1270643 NA other downstream 2119458 23377308 ~ 23377560 (+)
G1270652 NA other downstream 2148810 23406660 ~ 23408002 (+)
G1270669 psme2 other downstream 2187988 23445838 ~ 23451494 (+)

Expression


Co-expression Network