Gene
RNA
| Item | Value |
|---|---|
| gene id | G1269191 |
| gene name | sspo |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 21689787 ~ 21691301 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| sspo | Involved in spinal cord anterior/posterior patterning. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Is expressed in floor plate; presumptive floor plate; and subcommissural organ. Used to study scoliosis. |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1450033 | True | 225 | lncRNA | 0.60 | 2 | 21689787 | 21691301 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| scospondin | sspo | coding | downstream | 9423 | 21617419 ~ 21680364 (-) |
| kcnh2b | LOC106590277 | coding | downstream | 75057 | 21312219 ~ 21614730 (-) |
| LOC110489787 | LOC106579666 | coding | downstream | 393061 | 21174593 ~ 21296726 (-) |
| LOC110489781 | NA | coding | downstream | 652285 | 21018809 ~ 21037502 (-) |
| LOC110489780 | NA | coding | downstream | 682515 | 21002118 ~ 21007272 (-) |
| LOC110489796 | LOC106590244 | coding | upstream | 162399 | 21853700 ~ 21864113 (-) |
| LOC110489804 | LOC106590285 | coding | upstream | 524170 | 22215471 ~ 22311271 (-) |
| LOC110489802 | LOC106590287 | coding | upstream | 621495 | 22312796 ~ 22359506 (-) |
| LOC110489790 | LOC106590241 | coding | upstream | 676230 | 22367531 ~ 22446695 (-) |
| LOC110489807 | LOC106590288 | coding | upstream | 953040 | 22644341 ~ 22676386 (-) |
| G1269176 | NA | non-coding | downstream | 63288 | 21624820 ~ 21626499 (-) |
| G1268998 | NA | non-coding | downstream | 88892 | 21600686 ~ 21600895 (-) |
| G1268966 | NA | non-coding | downstream | 135487 | 21554055 ~ 21554300 (-) |
| G1268964 | NA | non-coding | downstream | 136837 | 21552644 ~ 21552950 (-) |
| G1268745 | NA | non-coding | downstream | 291367 | 21314995 ~ 21398420 (-) |
| G1269193 | sspo | non-coding | upstream | 513 | 21691814 ~ 21692198 (-) |
| G1269252 | LOC106590280 | non-coding | upstream | 85252 | 21776553 ~ 21777910 (-) |
| G1269256 | LOC106590280 | non-coding | upstream | 95221 | 21786522 ~ 21788838 (-) |
| G1269264 | NA | non-coding | upstream | 108563 | 21799864 ~ 21800419 (-) |
| G1269271 | gfod1 | non-coding | upstream | 148968 | 21840269 ~ 21867424 (-) |
| G1268555 | LOC106590243 | other | downstream | 729698 | 20958372 ~ 20960089 (-) |
| G1267452 | NA | other | downstream | 1399114 | 20290350 ~ 20290673 (-) |
| G1267414 | NA | other | downstream | 1421299 | 20267966 ~ 20268488 (-) |
| G1266708 | LOC106590345 | other | downstream | 2236017 | 19435018 ~ 19453770 (-) |
| G1266471 | NA | other | downstream | 2580430 | 19108559 ~ 19109357 (-) |
| G1269265 | NA | other | upstream | 111386 | 21802687 ~ 21803352 (-) |
| G1271421 | NA | other | upstream | 2022054 | 23713355 ~ 23728939 (-) |
| G1274532 | LOC106590196 | other | upstream | 4354947 | 26046058 ~ 26048599 (-) |
| G1275015 | NA | other | upstream | 4820224 | 26511525 ~ 26512075 (-) |
| G1275016 | LOC106590191 | other | upstream | 4863667 | 26554968 ~ 26562033 (-) |
