G1269252 (LOC106590280)


Basic Information

Item Value
gene id G1269252
gene name LOC106590280
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21776553 ~ 21777910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1450108
cctccagttCTTTGTGTGGGGCGGCGCCTCCTCCAGGCGAATTAGGGCGTAGCGGGCGGCATTGAGAGACAGACCATTTATACCATCACCCCACTCCTTCTCCGCCCCTCTGTATTCAATGTACTTGTAGATGCAGCCAGCGATCAGCATGGCCACCAGGGCATAGTACCAGGAGGAGATGAACATcagggagagacacagactggCGCCCAGGAAAGACAGAGCCCTGTGGAGTACGAGAGACGGACGAGAGCATGGAGGTCACAGTCAGTCATATAGGAGTACATTTTGACAGCCCAAAAATGACAAGCTGATTCCTTAAGTAATCAAACCTATCCTATTAATTCAGATACTCTGCAGGGTACTCGGTTCAAAACAAGATAGCACATGTCaatccatgccgtccctaggaagggtgcgtcacttgagtgggttgagtcactaacgtgatcttcctgtccaggttgGCGCCCCCTCGGGTCCGTGCCATGggggagatcttcatgggctatagtcagccttgtctcagggtagtaagttggtgggttgcggatatccctctagtggtgtgggggttgtgctttggtaaagtgggtggggttatatcctgcctggctGGCCCTGTTCGGGGGTATCATTGGACGGGGCCATAGTGTCTCCCAACccgtcctgtctcagcctccagtatctatgctacaatagtttatgtgtcgggggctagggtctgtTATATCTGGTCTAATTACCcggtcttatccagtgtcctttgtgaatttaagtatgctccgtctaattccctctctctccctctccctccccttccagaggacctgagccctaggaccatgcctcaggactacctggcctgatgactccttgctgtccccagtccacctggtcgtgctgctgcttcagtttcaactgttctgcctgcggctatggaaccctgacctgttcactggatgtgctaccttgtcctggatctgctgttttcgactctctctctccctctaccgcacctgctgtctcgaactctgaatgctcggctatgaaaagccaactgacatttactcctgaggtgctgacctgcaccctctacaaccactgtgattattattatttgaccctgctggtcatctatgaatgtttgaacatctaggccatgtactgttataatctccacctggcacagccagaagaggactggccacccctcagagtctggttcctctctaggtttcttc

Function

NR:

description
PREDICTED: solute carrier family 12 member 7-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1450108 True 1244 lncRNA 0.52 2 21776553 21777910

Neighbor

gene id symbol gene type direction distance location
scospondin sspo coding downstream 96189 21617419 ~ 21680364 (-)
kcnh2b LOC106590277 coding downstream 161823 21312219 ~ 21614730 (-)
LOC110489787 LOC106579666 coding downstream 479827 21174593 ~ 21296726 (-)
LOC110489781 NA coding downstream 739051 21018809 ~ 21037502 (-)
LOC110489780 NA coding downstream 769281 21002118 ~ 21007272 (-)
LOC110489796 LOC106590244 coding upstream 75790 21853700 ~ 21864113 (-)
LOC110489804 LOC106590285 coding upstream 437561 22215471 ~ 22311271 (-)
LOC110489802 LOC106590287 coding upstream 534886 22312796 ~ 22359506 (-)
LOC110489790 LOC106590241 coding upstream 589621 22367531 ~ 22446695 (-)
LOC110489807 LOC106590288 coding upstream 866431 22644341 ~ 22676386 (-)
G1269193 sspo non-coding downstream 84355 21691814 ~ 21692198 (-)
G1269191 sspo non-coding downstream 85252 21689787 ~ 21691301 (-)
G1269176 NA non-coding downstream 150054 21624820 ~ 21626499 (-)
G1268998 NA non-coding downstream 175658 21600686 ~ 21600895 (-)
G1268966 NA non-coding downstream 222253 21554055 ~ 21554300 (-)
G1269256 LOC106590280 non-coding upstream 8612 21786522 ~ 21788838 (-)
G1269264 NA non-coding upstream 21954 21799864 ~ 21800419 (-)
G1269271 gfod1 non-coding upstream 62359 21840269 ~ 21867424 (-)
G1269331 NA non-coding upstream 122119 21900029 ~ 21900228 (-)
G1269337 NA non-coding upstream 125635 21903545 ~ 21904016 (-)
G1268555 LOC106590243 other downstream 816464 20958372 ~ 20960089 (-)
G1267452 NA other downstream 1485880 20290350 ~ 20290673 (-)
G1267414 NA other downstream 1508065 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 2322783 19435018 ~ 19453770 (-)
G1266471 NA other downstream 2667196 19108559 ~ 19109357 (-)
G1269265 NA other upstream 24777 21802687 ~ 21803352 (-)
G1271421 NA other upstream 1935445 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 4268338 26046058 ~ 26048599 (-)
G1275015 NA other upstream 4733615 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 4777058 26554968 ~ 26562033 (-)

Expression


Co-expression Network