G1269256 (LOC106590280)


Basic Information

Item Value
gene id G1269256
gene name LOC106590280
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21786522 ~ 21788838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1450112
GTTCTCGTCGCCCCCTCTGTTTTTGGGCGGTCCCGGCATGTTGAGCAGGACCAGGTGGGCTCCCTGTGATTTGTTGACCACCACCTCGTTCAGCTTGACCGCAGTGTGCATCCGGCGCACGTTGGACTGGTTCAGACTCTCCCACTCTGGTTTCATGTTGAAGATGTCGCGCACGCCCATGCTGGCCTCGGCGCGGTTGCGGTTGCGCTCGGTGAGGAACTTATCCTTGGTCCAGGTCATGTGGACCCGGTCAGGGCCAGCGTCGGCCTTGTCGTTAAGTGCGGCGTGAGACGCCGTGTTTCTGTCATGGATCAGCTGGGCCTGAAGCAGAGGGAGATgatgagagagtgatagagagagcaagagagaagaagagagagagagaga

Function

NR:

description
solute carrier family 12 member 7-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1450112 True 387 lncRNA 0.59 3 21786522 21788838

Neighbor

gene id symbol gene type direction distance location
scospondin sspo coding downstream 106158 21617419 ~ 21680364 (-)
kcnh2b LOC106590277 coding downstream 171792 21312219 ~ 21614730 (-)
LOC110489787 LOC106579666 coding downstream 489796 21174593 ~ 21296726 (-)
LOC110489781 NA coding downstream 749020 21018809 ~ 21037502 (-)
LOC110489780 NA coding downstream 779250 21002118 ~ 21007272 (-)
LOC110489796 LOC106590244 coding upstream 64862 21853700 ~ 21864113 (-)
LOC110489804 LOC106590285 coding upstream 426633 22215471 ~ 22311271 (-)
LOC110489802 LOC106590287 coding upstream 523958 22312796 ~ 22359506 (-)
LOC110489790 LOC106590241 coding upstream 578693 22367531 ~ 22446695 (-)
LOC110489807 LOC106590288 coding upstream 855503 22644341 ~ 22676386 (-)
G1269252 LOC106590280 non-coding downstream 8612 21776553 ~ 21777910 (-)
G1269193 sspo non-coding downstream 94324 21691814 ~ 21692198 (-)
G1269191 sspo non-coding downstream 95221 21689787 ~ 21691301 (-)
G1269176 NA non-coding downstream 160023 21624820 ~ 21626499 (-)
G1268998 NA non-coding downstream 185627 21600686 ~ 21600895 (-)
G1269264 NA non-coding upstream 11026 21799864 ~ 21800419 (-)
G1269271 gfod1 non-coding upstream 51431 21840269 ~ 21867424 (-)
G1269331 NA non-coding upstream 111191 21900029 ~ 21900228 (-)
G1269337 NA non-coding upstream 114707 21903545 ~ 21904016 (-)
G1269387 LOC106590282 non-coding upstream 120988 21909826 ~ 21951219 (-)
G1268555 LOC106590243 other downstream 826433 20958372 ~ 20960089 (-)
G1267452 NA other downstream 1495849 20290350 ~ 20290673 (-)
G1267414 NA other downstream 1518034 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 2332752 19435018 ~ 19453770 (-)
G1266471 NA other downstream 2677165 19108559 ~ 19109357 (-)
G1269265 NA other upstream 13849 21802687 ~ 21803352 (-)
G1271421 NA other upstream 1924517 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 4257410 26046058 ~ 26048599 (-)
G1275015 NA other upstream 4722687 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 4766130 26554968 ~ 26562033 (-)

Expression


Co-expression Network