G1269387 (LOC106590282)


Basic Information

Item Value
gene id G1269387
gene name LOC106590282
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21909826 ~ 21951219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1450256
CCACAAACCTGTCCAGCCCTGTGCCACCGGCGTTGCCCACGAAGATGCCCGAGCTGGCCTCAAAGGTGAGGGGCTCCGGGCTCCTCTGGAAGGCCACGCGGTGGTACTCCTCACAGTCCATGTAGAGGCGCACCTCCGCCCCCTGCACCGTCAGCGTGAAGCGGGCCCACCTCCCCGTCAGGTCACCCAGCTTGAAGCTGGCCGCCTCCTTGGTGCTCCCATCCCCCGGGTCGGTGTAGTAAAGGAGCACCCGCTGAGACCCATCCTCCACGGGGCTCAACGCCACCCCCAGGTGCACCACCCGCTGGTAGGCGTCGGTGATTGCGAAGAGGACCCCGCCGCGCTGCGTGGTGGGCTTGGCGGTGACGGTCATGGCAAAGTCACGGTAGAAGGGGTCGGGGATGAAGGACTTGGTGAGGCGGCCAACGTTGGCATCGGGCCCGAAGCTGTACGCCGGGTAGCCCTCGAACCCTGTGATGAAGGAGACCGATGGGGGGAGAGGAATGCCGATCAGCTCGGTCAGGTCTATCTGGCCCTGGGAGCCccgctCGTCCAGAAGCTGATATGCAGTCGACAGTTGGCAGTACCACAAGGCGAGATGTATTCCAAAGGACCACAGGGAGAGGCGTGAAGTCATCTTCGATCTTGTTAAGTCCACACAAAAGTCCTCTTGTTCCAATGTGATAGTGGTAAGAGTTGGAGCCCGCTCtatccctcactcactccctcttaAAAAGATCTTGCTCTCCCCCTCACTTGGACTGCCCGCATTTGCAAATGAAACAAAGGCTGCTTTAGTCCTCCAAGACTGAACCGGTCCTCAAACACTGAAATCTGACTCCTCACAGTCGCTCTTCCTGGACCACTGCTTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1450256 True 873 lncRNA 0.60 3 21909826 21951219

Neighbor

gene id symbol gene type direction distance location
LOC110489796 LOC106590244 coding downstream 45713 21853700 ~ 21864113 (-)
scospondin sspo coding downstream 229462 21617419 ~ 21680364 (-)
kcnh2b LOC106590277 coding downstream 295096 21312219 ~ 21614730 (-)
LOC110489787 LOC106579666 coding downstream 613100 21174593 ~ 21296726 (-)
LOC110489781 NA coding downstream 872324 21018809 ~ 21037502 (-)
LOC110489804 LOC106590285 coding upstream 264252 22215471 ~ 22311271 (-)
LOC110489802 LOC106590287 coding upstream 361577 22312796 ~ 22359506 (-)
LOC110489790 LOC106590241 coding upstream 416312 22367531 ~ 22446695 (-)
LOC110489807 LOC106590288 coding upstream 693122 22644341 ~ 22676386 (-)
LOC118938910 NA coding upstream 844345 22795564 ~ 22796979 (-)
G1269337 NA non-coding downstream 5810 21903545 ~ 21904016 (-)
G1269331 NA non-coding downstream 9598 21900029 ~ 21900228 (-)
G1269271 gfod1 non-coding downstream 42402 21840269 ~ 21867424 (-)
G1269264 NA non-coding downstream 109407 21799864 ~ 21800419 (-)
G1269256 LOC106590280 non-coding downstream 120988 21786522 ~ 21788838 (-)
G1269434 NA non-coding upstream 39627 21990846 ~ 21991885 (-)
G1269588 NA non-coding upstream 174491 22125710 ~ 22130051 (-)
G1269603 NA non-coding upstream 180758 22131977 ~ 22132223 (-)
G1269623 NA non-coding upstream 200220 22151439 ~ 22151670 (-)
G1269869 NA non-coding upstream 201954 22153173 ~ 22153886 (-)
G1269265 NA other downstream 106474 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 949737 20958372 ~ 20960089 (-)
G1267452 NA other downstream 1619153 20290350 ~ 20290673 (-)
G1267414 NA other downstream 1641338 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 2456056 19435018 ~ 19453770 (-)
G1271421 NA other upstream 1762136 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 4095029 26046058 ~ 26048599 (-)
G1275015 NA other upstream 4560306 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 4603749 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 4619059 26566351 ~ 26694581 (-)

Expression


Co-expression Network