G1269434


Basic Information

Item Value
gene id G1269434
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21990846 ~ 21991885 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1450307
TTTTTTTTTGTGGTGAATTTCTATATGATGGGTGGAATTTATGTTAAATCTAACTAGGTACCTATCAAATCAAAATTCTAGCGCAGTAAAAGGAATGCTGTACAAAAAACAACCAATTTCAGAAGAGGCAAAAAACTGAAACAGTCACTTTGACAAACAATCTATAAATTACATACTTAACCTTAATCATTTGATTCATTCATGTTATGTGCGGTCAAGGTATAAATAAAACATTGAATTTAAATTAAACACTGAGAGAAATTGTTGCTCAAATGAGAAATGTGTatgaaatgtataaaaaaaaagctGAAAGACAATCTTCATGGATATGAAGTGACAAAAGTATAAAACAAATCTAATACAGTGCATCAAAATTTCTTTGGTGGTAATACTGGTTGTTCCCTTGTTGGAATATGGACATTATGTTGTGTGAAATATggtattggccctggtctaatggAGTTAACATCTCTTATAGAATGACCTAATAGGACAATCTGTAAACACGACCAATCACTGGAAGACAAAAGGTGACATTTTGACGAGGAGAAATATCTGTAGTGAGAAAGAATCTTGAAAGTTGACAGTTGTAATTtgaaagttggtttagaaaaacTGTGCAAAGCCACGATTTGGAGCTGGTCTGACAGACAGTATCCGCTCTTTAGCACCATCTcagtcaatcaaccaaccaatcagaggATGGGAGAGGAACAAGTTGATGACGATGATGACATGTTCATAAAGCAATGTTCATGTATTTACACCTTTCCAGAGTGTTAAGATGACAGTGGATGGATTGGGGGgggcatgagaCTGTTAAAGGTCTATTAAACATGCTCTATGGTCTCGATGCAGAGAATAATTAACTCGTTGGAGCAGCTGCTTGTTTGCTGTCCTATAAGGGAGCCCGAGGACAAACTGGACGACTGGCCCACGATGGAAATGTCGTTGACCCGCCACGACTCGCAGGACCGGTCTACCGCCATGTTGCCAAACGTATTGGAGCCGTG

Function

NR:

description
collagen alpha-1(XVIII) chain-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1450307 True 1013 lncRNA 0.38 2 21990846 21991885

Neighbor

gene id symbol gene type direction distance location
LOC110489796 LOC106590244 coding downstream 126733 21853700 ~ 21864113 (-)
scospondin sspo coding downstream 310482 21617419 ~ 21680364 (-)
kcnh2b LOC106590277 coding downstream 376116 21312219 ~ 21614730 (-)
LOC110489787 LOC106579666 coding downstream 694120 21174593 ~ 21296726 (-)
LOC110489781 NA coding downstream 953344 21018809 ~ 21037502 (-)
LOC110489804 LOC106590285 coding upstream 223586 22215471 ~ 22311271 (-)
LOC110489802 LOC106590287 coding upstream 320911 22312796 ~ 22359506 (-)
LOC110489790 LOC106590241 coding upstream 375646 22367531 ~ 22446695 (-)
LOC110489807 LOC106590288 coding upstream 652456 22644341 ~ 22676386 (-)
LOC118938910 NA coding upstream 803679 22795564 ~ 22796979 (-)
G1269387 LOC106590282 non-coding downstream 39627 21909826 ~ 21951219 (-)
G1269337 NA non-coding downstream 86830 21903545 ~ 21904016 (-)
G1269331 NA non-coding downstream 90618 21900029 ~ 21900228 (-)
G1269271 gfod1 non-coding downstream 123422 21840269 ~ 21867424 (-)
G1269264 NA non-coding downstream 190427 21799864 ~ 21800419 (-)
G1269588 NA non-coding upstream 133825 22125710 ~ 22130051 (-)
G1269603 NA non-coding upstream 140092 22131977 ~ 22132223 (-)
G1269623 NA non-coding upstream 159554 22151439 ~ 22151670 (-)
G1269869 NA non-coding upstream 161288 22153173 ~ 22153886 (-)
G1269870 lancl2 non-coding upstream 162354 22154239 ~ 22181679 (-)
G1269265 NA other downstream 187494 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 1030757 20958372 ~ 20960089 (-)
G1267452 NA other downstream 1700173 20290350 ~ 20290673 (-)
G1267414 NA other downstream 1722358 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 2537076 19435018 ~ 19453770 (-)
G1271421 NA other upstream 1721470 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 4054363 26046058 ~ 26048599 (-)
G1275015 NA other upstream 4519640 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 4563083 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 4578393 26566351 ~ 26694581 (-)

Expression


Co-expression Network