G1269870 (lancl2)


Basic Information

Item Value
gene id G1269870
gene name lancl2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22154239 ~ 22181679 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1450778
CGGACAAGTGCCAATATTAGGCGTATTAGTTGTCAAATTGTACATGAAGAGATGGGCACATCTTGTAATTGACAGATGCAAGGAAATTGATATTTCTTCATGCAATTAATCCTTTATGATAGTTTATGCACTATTTATCAAGTGGTGGTGCTTATGTTTGCGCACCTTGAGGGTTGATATGCATCTGATGCATATGCTAAACGTGCGCCCGGCGGCGTTGTCTAGCGGGTACTTATAGGCTGAAAGGCCAGGAGGTTCTGGTGTTCATGCCAACAACAAATCTAGTATTAAAGAAAGGAGCTTCAAAAAGAACAACAATATTTCCACTGCAGTCGGAGAGTTTTTAAAAGCTCCCTACTTGGTGAGGCACTCCTGACTCTCTGTCTGGTTCTTGAGGCGGTGGTGCACCACAGCAGCCACGGCCAGTGGCCCTGCATCCCCACACAGGAAGGTGACCTTGCGACCATTCAGGATCCTCAGGGTCCTCTTCACATAGTCCAGTGCCCTCTGGAGGTGGGAGGCCTCGCAGGTCACCCGGTGCAACTGCAGGTAGAGAAGGGCGATACCTGTCCAGCCCGTATAGGTGGAGAAGTCGTGGGGGTCGGCCGTCTTCAGGCCCTCCTCCATCTGCTGCAGCAGGTCCTTGATCTTATTCTGCACCTTCTTCTGGAACACCTCGCTGATCTTTCCATTTTCGCCGAAAGGCTCGTTGCAGTCACTGTCCATTCCTGAATTGGAAGATGTGAAGACTCCTTGGTCCCAGTCGGGGTACGGGTTGATAAAAGATCTTTCCTCCATCTCCGCTTCCGTAGCCGACACTAATTTCAATCTTTTGGACATGTTGTCTCCCATTTTAACGGCAACTCGTCAAGGCCAAAATGTATACGGACT

Function

symbol description
lancl2 Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in plasma membrane. Orthologous to human LANCL2 (LanC like 2).

NR:

description
lanC-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1450778 True 891 lncRNA 0.49 3 22154239 22181679

Neighbor

gene id symbol gene type direction distance location
LOC110489796 LOC106590244 coding downstream 290126 21853700 ~ 21864113 (-)
scospondin sspo coding downstream 473875 21617419 ~ 21680364 (-)
kcnh2b LOC106590277 coding downstream 539509 21312219 ~ 21614730 (-)
LOC110489787 LOC106579666 coding downstream 857513 21174593 ~ 21296726 (-)
LOC110489781 NA coding downstream 1116737 21018809 ~ 21037502 (-)
LOC110489804 LOC106590285 coding upstream 33792 22215471 ~ 22311271 (-)
LOC110489802 LOC106590287 coding upstream 131117 22312796 ~ 22359506 (-)
LOC110489790 LOC106590241 coding upstream 185852 22367531 ~ 22446695 (-)
LOC110489807 LOC106590288 coding upstream 462662 22644341 ~ 22676386 (-)
LOC118938910 NA coding upstream 613885 22795564 ~ 22796979 (-)
G1269869 NA non-coding downstream 353 22153173 ~ 22153886 (-)
G1269623 NA non-coding downstream 2569 22151439 ~ 22151670 (-)
G1269603 NA non-coding downstream 22016 22131977 ~ 22132223 (-)
G1269588 NA non-coding downstream 24188 22125710 ~ 22130051 (-)
G1269434 NA non-coding downstream 162354 21990846 ~ 21991885 (-)
G1269923 NA non-coding upstream 49840 22231519 ~ 22278813 (-)
G1270080 NA non-coding upstream 324275 22505954 ~ 22507435 (-)
G1270094 NA non-coding upstream 350417 22532096 ~ 22532307 (-)
G1270105 NA non-coding upstream 356298 22537977 ~ 22538213 (-)
G1269265 NA other downstream 350887 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 1194150 20958372 ~ 20960089 (-)
G1267452 NA other downstream 1863566 20290350 ~ 20290673 (-)
G1267414 NA other downstream 1885751 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 2700469 19435018 ~ 19453770 (-)
G1271421 NA other upstream 1531676 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 3864569 26046058 ~ 26048599 (-)
G1275015 NA other upstream 4329846 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 4373289 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 4388599 26566351 ~ 26694581 (-)

Expression


Co-expression Network